CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12165.1.A1_at

Gene name ABC-type Co2+ transport system, permease component
Homology with Arabidopsis Similar to At1g15900: unknown protein (HF=4e-1)

Module size 6 genes

NF 0.30

%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 0.97 Zm.12165.1.A1_at BI595866 ABC-type Co2+ transport system, permease component - 4e-1 At1g15900 unknown protein O.I. H.G. S.X.
0.44 55.7 0.97 Zm.2517.3.A1_x_at AF371272.1 zein polypeptidesL2b - 9e-1 At5g62360 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.31 31.6 0.97 Zm.5058.1.A1_at BG266535 hypothetical protein LOC100217195 - 4e+0 At4g33960 unknown protein O.I. H.G. S.X.
0.21 15.5 0.97 Zm.5965.1.A1_at AI665966 Hypothetical protein LOC100192560 - 2e+0 At5g19140 AILP1 O.I. H.G. S.X.
0.20 14.2 0.97 Zm.12101.1.A1_at AY106369.1 hypothetical protein LOC100276199 - 8e-2 At3g62770 AtATG18a O.I. H.G. S.X.
0.20 14.2 0.97 Zm.18133.1.A1_at AY103981.1 - - 8e-38 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	58.4	0.97	Zm.8617.1.A1_at	BM074921	hypothetical protein LOC100194322	-	2e+0	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	O.I.	H.G.	S.X.
0.40	48.5	0.92	Zm.2014.1.S1_at	BE509884	-	-	3e-1	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.
0.40	48.5	0.95	Zm.15997.1.S1_at	CK368005	hypothetical protein LOC100274725	-	2e-5	At5g47570	unknown protein	O.I.	H.G.	S.X.
0.38	44.2	0.96	Zm.3965.1.A1_at	AY108346.1	ATP-dependent RNA helicase DDX41	-	1e-8	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.
0.38	44.2	0.96	Zm.17329.1.A1_at	AI691463	hypothetical protein LOC100280033	-	8e-1	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.17888.1.S1_at	CK787196	AN15	-	2e+0	At2g40802	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.98	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.14133.1.A1_at	CF633639	gibberellin receptor GID1L2	-	7e+0	At4g03113	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.4392.2.A1_x_at	AW787551	Ran-related GTP binding protein	-	3e-63	At5g20020	RAN2	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.17085.1.A1_at	AW562719	sialyltransferase like protein	-	7e-8	At1g08660	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.
0.31	31.6	0.98	Zm.5093.1.A1_at	AI600800	GAGA-binding protein	-	4e-4	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	O.I.	H.G.	S.X.
0.29	28.1	0.98	ZmAffx.772.1.S1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.1480.1.A1_at	CA403094	-	-	1e+0	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.10403.2.A1_at	CO522248	transmembrane 9 superfamily protein member 2	-	8e-32	At5g35160	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.7 98.1 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.6 97.6 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2 97.4 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0 96.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6 96.4 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1 95.9 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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