Co-expression analysis

Gene ID	Zm.12165.1.A1_at
Gene name	ABC-type Co2+ transport system, permease component
Homology with Arabidopsis	Similar to At1g15900: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.30
%ile	28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.97	Zm.12165.1.A1_at	BI595866	ABC-type Co2+ transport system, permease component	-	4e-1	At1g15900	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.2517.3.A1_x_at	AF371272.1	zein polypeptidesL2b	-	9e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.5058.1.A1_at	BG266535	hypothetical protein LOC100217195	-	4e+0	At4g33960	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.5965.1.A1_at	AI665966	Hypothetical protein LOC100192560	-	2e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.12101.1.A1_at	AY106369.1	hypothetical protein LOC100276199	-	8e-2	At3g62770	AtATG18a	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.1	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.6	97.6	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.28992.1.S1_at, orthologous to the query gene, Zm.12165.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.8	TaAffx.28992.1.S1_at	At1g15900	-	-	1e-2	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.113803.1.S1_at	At1g15900	-	-	1e-1	At3g44326	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.17391.1.S1_at	At1g15900	-	-	4e+0	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.28791.1.A1_at	At1g15900	CBF4-like protein /// CBFIVd-4.1	-	1e+0	At1g12610	DDF1 (DWARF AND DELAYED FLOWERING 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.128557.2.A1_at	At1g15900	-	-	4e+0	At1g52220	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.7778.1.S1_at	At1g15900	-	-	5e+0	At2g18210	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.55554.1.S1_at	At1g15900	-	-	2e+1	At5g38220	hydrolase	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.14993.1.S1_at	At1g15900	-	-	3e-2	At1g78600	LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.72743.1.S1_at	At1g15900	-	-	1e+0	At2g20100	ethylene-responsive family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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