Co-expression analysis

Gene ID Zm.12165.1.A1_at
Gene name ABC-type Co2+ transport system, permease component
Homology with ArabidopsisSimilar to At1g15900: unknown protein (HF=4e-1)
Module size 6 genes
NF 0.30
%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.97Zm.12165.1.A1_atBI595866ABC-type Co2+ transport system, permease component-4e-1At1g15900unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.2517.3.A1_x_atAF371272.1zein polypeptidesL2b-9e-1At5g62360invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3131.60.97Zm.5058.1.A1_atBG266535hypothetical protein LOC100217195-4e+0At4g33960unknown proteinO.I.H.G.S.X.
0.2115.50.97Zm.5965.1.A1_atAI665966Hypothetical protein LOC100192560-2e+0At5g19140AILP1O.I.H.G.S.X.
0.2014.20.97Zm.12101.1.A1_atAY106369.1hypothetical protein LOC100276199-8e-2At3g62770AtATG18aO.I.H.G.S.X.
0.2014.20.97Zm.18133.1.A1_atAY103981.1--8e-38At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.798.1GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
6.697.6GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320442protocol: mRNA - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HV_CEa0012B15f_s_at, orthologous to the query gene, Zm.12165.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9398.7HV_CEa0012B15f_s_atAt1g15900--3e+0At5g6117040S ribosomal protein S19 (RPS19C)O.I.H.G.S.X.
0.6380.3Contig1791_x_atAt1g15900--7e-165At4g13940MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)O.I.H.G.S.X.
0.6380.3Contig16627_atAt1g15900--2e+0At1g80690unknown proteinO.I.H.G.S.X.
0.6178.7Contig8852_atAt1g15900--3e-3At1g22950iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.5674.3Contig19912_atAt1g15900--2e+0At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.5167.5Contig11888_atAt1g15900--8e-1At3g10260reticulon family proteinO.I.H.G.S.X.
0.3950.5Contig21145_atAt1g15900--4e+0At4g21020late embryogenesis abundant domain-containing protein / LEA domain-containing proteinO.I.H.G.S.X.
0.3950.5Contig16368_atAt1g15900--1e-40At3g29320glucan phosphorylase, putativeO.I.H.G.S.X.
0.3849.5Contig17124_atAt1g15900--6e-1At3g20180metal ion bindingO.I.H.G.S.X.
0.3747.9Contig12771_atAt1g15900--9e-15At5g10940transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3747.9Contig137_x_atAt1g15900--1e-6At1g08880H2AXAO.I.H.G.S.X.
0.3647.1Contig5607_s_atAt1g15900--4e-1At3g17160unknown proteinO.I.H.G.S.X.
0.3647.1Contig24887_atAt1g15900--1e+0At4g35650isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.3240.3Contig18122_atAt1g15900--3e-1Atmg00750-O.I.H.G.S.X.
0.3037.0Contig3640_atAt1g15900--5e-64At4g23100GSH1 (GLUTAMATE-CYSTEINE LIGASE)O.I.H.G.S.X.
0.2630.4Contig9145_atAt1g15900--3e-3At3g24210ankyrin repeat family proteinO.I.H.G.S.X.
0.2630.4HV09C12u_atAt1g15900--4e+0At1g30510ATRFNR2 (ROOT FNR 2)O.I.H.G.S.X.
0.2528.9Contig6701_s_atAt1g15900--1e+0At5g55508unknown proteinO.I.H.G.S.X.
0.2326.1Contig21646_atAt1g15900--1e+0At5g42180peroxidase 64 (PER64) (P64) (PRXR4)O.I.H.G.S.X.
0.2224.2HVSMEn0020G09f_s_atAt1g15900--9e-1At2g20540pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.1412.9Contig2163_atAt1g15900--3e-1At2g04046-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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