Co-expression analysis

Gene ID Zm.12165.1.A1_at
Gene name ABC-type Co2+ transport system, permease component
Homology with ArabidopsisSimilar to At1g15900: unknown protein (HF=4e-1)
Module size 6 genes
NF 0.30
%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.97Zm.12165.1.A1_atBI595866ABC-type Co2+ transport system, permease component-4e-1At1g15900unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.2517.3.A1_x_atAF371272.1zein polypeptidesL2b-9e-1At5g62360invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3131.60.97Zm.5058.1.A1_atBG266535hypothetical protein LOC100217195-4e+0At4g33960unknown proteinO.I.H.G.S.X.
0.2115.50.97Zm.5965.1.A1_atAI665966Hypothetical protein LOC100192560-2e+0At5g19140AILP1O.I.H.G.S.X.
0.2014.20.97Zm.12101.1.A1_atAY106369.1hypothetical protein LOC100276199-8e-2At3g62770AtATG18aO.I.H.G.S.X.
0.2014.20.97Zm.18133.1.A1_atAY103981.1--8e-38At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.798.1GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
6.697.6GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320442protocol: mRNA - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.39967.1.A1_at, orthologous to the query gene, Zm.12165.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.98100.0GmaAffx.39967.1.A1_atAt1g15900--3e+0At1g80180unknown proteinO.I.H.G.S.X.
0.4968.3PsAffx.C8000001_atAt1g15900--1e+1At5g40530-O.I.H.G.S.X.
0.4463.3PsAffx.C86000041_atAt1g15900--2e-1At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.4360.6GmaAffx.2447.1.S1_atAt1g15900--3e+0At3g29575AFP3 (ABI FIVE BINDING PROTEIN 3)O.I.H.G.S.X.
0.4259.3GmaAffx.35380.1.A1_atAt1g15900--3e+0At2g35270DNA-binding protein-relatedO.I.H.G.S.X.
0.3954.5PsAffx.psZG005xN22f_s_atAt1g15900--9e+0At5g14602unknown proteinO.I.H.G.S.X.
0.3650.8PsAffx.C18000104_atAt1g15900--2e+0At5g15430calmodulin-binding protein-relatedO.I.H.G.S.X.
0.3650.8PsAffx.C45000036_atAt1g15900--7e-1At1g20930CDKB2O.I.H.G.S.X.
0.3346.1PsAffx.C14000078_atAt1g15900--4e-1At2g01180ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)O.I.H.G.S.X.
0.3142.2PsAffx.C30000086_atAt1g15900--6e-1At2g42590GRF9 (GENERAL REGULATORY FACTOR 9)O.I.H.G.S.X.
0.3142.2GmaAffx.1301.81.S1_atAt1g15900differentially expressed in soybean-5e+0At4g22370unknown proteinO.I.H.G.S.X.
0.3040.4PsAffx.C32000038_atAt1g15900--2e-2At2g37590Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3040.4HgAffx.22459.1.S1_atAt1g15900--7e-1At3g57500unknown proteinO.I.H.G.S.X.
0.2939.0PsAffx.C6000181_atAt1g15900--4e+0At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.2735.7HgAffx.17922.1.S1_atAt1g15900--1e+0At5g24560AtPP2-B12 (Phloem protein 2-B12)O.I.H.G.S.X.
0.2430.9PsAffx.C134000032_atAt1g15900--3e-1At2g39880MYB25 (myb domain protein 25)O.I.H.G.S.X.
0.2430.9PsAffx.C83000002_atAt1g15900--9e-1At3g28980unknown proteinO.I.H.G.S.X.
0.2329.9GmaAffx.89500.1.A1_atAt1g15900--1e+1At5g48860unknown proteinO.I.H.G.S.X.
0.2329.9PsAffx.C105000039_atAt1g15900--1e-4At4g17950DNA-binding family proteinO.I.H.G.S.X.
0.2329.9PsAffx.psZO002iD02r_atAt1g15900--4e+0At4g13500unknown proteinO.I.H.G.S.X.
0.2126.6PsAffx.psZS011xO03f_atAt1g15900--4e+0At5g0951040S ribosomal protein S15 (RPS15D)O.I.H.G.S.X.
0.2025.1GmaAffx.23917.1.A1_atAt1g15900--1e+0At2g04550IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)O.I.H.G.S.X.
0.1822.3PsAffx.C46000066_atAt1g15900--1e-1At5g37550unknown proteinO.I.H.G.S.X.
0.1619.7GmaAffx.39987.1.S1_s_atAt1g15900--1e+1At1g78040pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.1518.7HgAffx.10011.1.S1_atAt1g15900--1e+0At5g65880unknown proteinO.I.H.G.S.X.
0.1316.3PsAffx.C170000010_atAt1g15900--7e+0At3g62840-O.I.H.G.S.X.
0.1316.3PsAffx.C12000110_atAt1g15900--1e+0At4g17615CBL1 (CALCINEURIN B-LIKE PROTEIN 1)O.I.H.G.S.X.
0.1316.3PsAffx.C11000025_atAt1g15900--5e-4At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.1316.3HgAffx.21514.1.S1_atAt1g15900--5e-1At5g45875SCRL27 (SCR-Like 27)O.I.H.G.S.X.
0.1316.3PsAffx.C167000011_atAt1g15900--3e-1At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.1215.1GmaAffx.91457.1.S1_x_atAt1g15900--2e-1At5g53040RWP-RK domain-containing proteinO.I.H.G.S.X.
0.1114.2PsAffx.C1023000002_atAt1g15900--3e+0At4g21540SPHK1 (SPHINGOSINE KINASE 1)O.I.H.G.S.X.
0.1114.2GmaAffx.76231.2.S1_atAt1g15900--1e+0At5g02840LCL1 (LHY/CCA1-like 1)O.I.H.G.S.X.
0.0912.0GmaAffx.90612.1.S1_atAt1g15900--2e-14At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.
0.0912.0GmaAffx.87825.2.S1_atAt1g15900--2e-1At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.0912.0GmaAffx.83815.1.S1_s_atAt1g15900--1e+0At1g04330unknown proteinO.I.H.G.S.X.
0.0912.0GmaAffx.7155.1.A1_atAt1g15900--2e-7At1g76140serine-type endopeptidase/ serine-type peptidaseO.I.H.G.S.X.
0.058.0Gma.478.1.S1_atAt1g15900--5e+0At3g49780ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)O.I.H.G.S.X.
0.058.0GmaAffx.90024.1.S1_atAt1g15900--1e-65At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.035.8Gma.15618.2.S1_atAt1g15900--2e-1At3g01311-O.I.H.G.S.X.
0.024.5GmaAffx.90658.1.S1_atAt1g15900--2e-18At4g14580CIPK4 (CBL-interacting protein kinase 4)O.I.H.G.S.X.
0.013.4Gma.8354.1.S1_atAt1g15900--4e-22At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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