Co-expression analysis

Gene ID Zm.12139.1.A1_at
Gene name EF-hand Ca2+-binding protein CCD1
Homology with ArabidopsisSimilar to At3g50550: unknown protein (HF=5e-4)
Module size 22 genes
NF 0.63
%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.83Zm.12139.1.A1_atCF348985EF-hand Ca2+-binding protein CCD1-5e-4At3g50550unknown proteinO.I.H.G.S.X.
0.7691.10.94Zm.1631.1.S1_atBF728966--4e+0At3g2223060S ribosomal protein L27 (RPL27B)O.I.H.G.S.X.
0.7590.80.95Zm.1458.1.S1_atBM418233hypothetical protein LOC100275716-1e+0At5g59610DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.7490.30.96Zm.6758.1.A1_atCF623725hypothetical protein LOC100279733-2e+0At4g35480RHA3BO.I.H.G.S.X.
0.7389.90.93Zm.1452.1.A1_atCA403441hypothetical protein LOC100191570-9e-3At3g50760GATL2 (Galacturonosyltransferase-like 2)O.I.H.G.S.X.
0.7288.60.94Zm.14519.1.A1_atAI691490cell wall integrity protein scw1-8e-7At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.6886.10.96Zm.12138.1.S1_atCO517967regulator of ribonuclease activity A-1e-4At5g16450dimethylmenaquinone methyltransferase family proteinO.I.H.G.S.X.
0.6785.80.95Zm.16313.2.S1_x_atBM073358hypothetical protein LOC100272662-4e+0At5g23320ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A)O.I.H.G.S.X.
0.6785.80.95Zm.3668.1.A1_atAI649862--1e-10At1g54450calcium-binding EF-hand family proteinO.I.H.G.S.X.
0.6582.10.95Zm.6762.1.A1_atAI396242hypothetical protein LOC100279105-2e+0At5g38650proteasome maturation factor UMP1 family proteinO.I.H.G.S.X.
0.6381.10.95Zm.16175.1.A1_atBM382604--8e-9At1g69180CRC (CRABS CLAW)O.I.H.G.S.X.
0.6381.10.95Zm.676.1.S1_a_atAF288075.1diphosphonucleotide phosphatase1-8e-4At5g63980SAL1O.I.H.G.S.X.
0.6279.80.96Zm.16340.1.A1_atCA402857DNA binding protein-1e-2At2g45430DNA-binding protein-relatedO.I.H.G.S.X.
0.6077.80.93Zm.15977.1.S1_atAY108613.1hypothetical protein LOC100274845 /// hypothetical protein LOC100278086-5e+0At5g19050unknown proteinO.I.H.G.S.X.
0.6077.80.95Zm.16339.1.S1_atAY107020.1calmodulin-binding protein MPCBP-5e-8At2g43040NPG1 (no pollen germination 1)O.I.H.G.S.X.
0.6077.80.94Zm.14392.1.S1_atAY104757.1dehydrin1-6e-7At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.5976.10.95Zm.3669.1.A1_atCF635493hypothetical protein LOC100279194-1e-42At5g36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeO.I.H.G.S.X.
0.5469.80.94Zm.6757.1.S1_atCF636648GAST1 protein-2e-3At5g15230GASA4 (GAST1 PROTEIN HOMOLOG 4)O.I.H.G.S.X.
0.5369.10.94Zm.6038.1.A1_atCD441025--8e-7At5g56160transporterO.I.H.G.S.X.
0.4961.90.93Zm.5351.1.S1_atAI619365--5e-1At1g56200emb1303 (embryo defective 1303)O.I.H.G.S.X.
0.4658.40.93Zm.14524.1.A1_atAY104558.1R2R3MYB-domain protein-8e-3At4g38620MYB4O.I.H.G.S.X.
0.4149.70.91Zm.3184.1.A1_atAY105651.1gibberellin 20-oxidase-5e-2At5g07200YAP169O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.798.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320444protocol: mRNA - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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