Co-expression analysis

Gene ID Zm.12137.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g06200: integral membrane family protein (HF=1e+0)
Module size 20 genes
NF 0.29
%ile 26.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7892.50.94Zm.12137.2.A1_atBM382624--1e+0At5g06200integral membrane family proteinO.I.H.G.S.X.
0.4658.40.96Zm.9091.1.S1_atBM266507--2e+0At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3945.60.96Zm.1415.1.A1_atBG840912hypothetical protein LOC100191304-3e-9At5g67400peroxidase 73 (PER73) (P73) (PRXR11)O.I.H.G.S.X.
0.3945.60.96Zm.6162.2.S1_atAI676924--4e-5At1g62760invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3844.20.96Zm.1825.1.S1_atAW574462--3e+0At3g59450calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3844.20.97Zm.744.1.A1_atBM332523ATP-dependent Clp protease adaptor protein ClpS containing protein-5e+0At5g39700MYB89 (myb domain protein 89)O.I.H.G.S.X.
0.3437.20.97Zm.5156.1.A1_atAI603750adaptin N terminal region family protein-1e-14At5g11490adaptin family proteinO.I.H.G.S.X.
0.3336.00.96Zm.4017.1.S1_atAY106327.1--9e-9At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.3233.40.97Zm.4531.1.A1_atAI734623--9e+0At4g12617unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.5987.1.A2_atAF019147.1cysteine protease component of protease-inhibitor complex-7e-14At5g43060cysteine proteinase, putative / thiol protease, putativeO.I.H.G.S.X.
0.2828.10.96Zm.6369.3.A1_atAI881634Putative zinc finger protein30-5e-5At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.2622.70.97Zm.17087.1.S1_atBM267086nonspecific lipid-transfer protein-1e+1At3g10915reticulon family proteinO.I.H.G.S.X.
0.2521.30.97ZmAffx.827.1.A1_atAI770520Growth-regulating factor 8-like-3e+0At3g21610-O.I.H.G.S.X.
0.2419.80.96ZmAffx.221.1.S1_atAI670229--8e-1At5g64670ribosomal protein L15 family proteinO.I.H.G.S.X.
0.2419.80.96Zm.807.1.A1_atBG836005hypothetical protein LOC100216722-5e-2At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.2115.50.95Zm.2384.1.A1_atAY104473.1--2e+0At1g02405proline-rich family proteinO.I.H.G.S.X.
0.2115.50.96Zm.12183.1.A1_atAW065430--1e+0At1g12020unknown proteinO.I.H.G.S.X.
0.2014.20.96Zm.2092.1.A1_atBM072795dnaJ protein-1e+0At5g01390DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.1710.60.96Zm.1042.1.A1_atAY105661.1--3e-1At2g25340ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)O.I.H.G.S.X.
0.136.80.96Zm.6084.2.S1_atAY105635.1--5e-28At3g13235ubiquitin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.798.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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