CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12132.3.S1_a_at

Gene name hypothetical protein LOC100192680
Homology with Arabidopsis Similar to At5g03240: UBQ3 (POLYUBIQUITIN 3) (HF=4e-50)

Module size 6 genes

NF 0.66

%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.12132.3.S1_a_at AI461523 hypothetical protein LOC100192680 - 4e-50 At5g03240 UBQ3 (POLYUBIQUITIN 3) O.I. H.G. S.X.
0.73 89.9 0.98 Zm.4099.2.A1_s_at AI770849 hypothetical protein LOC100191159 - 8e-1 At2g38870 protease inhibitor, putative O.I. H.G. S.X.
0.67 85.8 0.98 Zm.18903.1.A1_at CO530915 - - 7e-2 At5g07400 forkhead-associated domain-containing protein / FHA domain-containing protein O.I. H.G. S.X.
0.56 74.4 0.97 ZmAffx.1074.1.S1_at AI947680 - - 1e+1 At2g42210 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein O.I. H.G. S.X.
0.53 69.1 0.98 Zm.6418.1.S1_at AY108322.1 hypothetical protein LOC100216693 - 2e-1 At3g44580 unknown protein O.I. H.G. S.X.
0.48 61.3 0.98 ZmAffx.1097.1.S1_at AW120085 - - 1e+1 At5g25770 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.0	0.98	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.
0.73	89.9	0.98	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.
0.67	85.8	0.98	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.
0.56	74.4	0.97	ZmAffx.1074.1.S1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.
0.53	69.1	0.98	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.
0.48	61.3	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.1	0.97	Zm.11907.1.S1_at	CK370738	hypothetical protein LOC100194010	-	2e-15	At3g24090	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.54.1.S1_at	L25805.1	alpha-amylase	-	3e-3	At4g25000	AMY1 (ALPHA-AMYLASE-LIKE)	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.246.1.A1_at	BM418437	glutathione transferase7	-	7e+0	At5g18180	Gar1 RNA-binding region family protein	O.I.	H.G.	S.X.
0.60	77.8	0.96	Zm.17772.1.S1_at	CK371641	-	-	6e-2	At4g28170	unknown protein	O.I.	H.G.	S.X.
0.59	76.1	0.97	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	O.I.	H.G.	S.X.
0.55	71.6	0.96	Zm.18466.1.A1_at	CO532706	hypothetical protein LOC100279872	-	2e+0	At5g51050	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.
0.53	69.1	0.95	Zm.19103.1.A1_at	AY104453.1	Hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	O.I.	H.G.	S.X.
0.53	69.1	0.95	Zm.341.1.A1_at	AF013487.1	-	-	6e-112	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.
0.50	65.7	0.95	Zm.6896.1.A1_at	AI065526	-	-	4e+0	At3g04890	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.1674.1.S1_at	AY106902.1	hypothetical protein LOC100217253	-	9e-10	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.
0.50	65.7	0.99	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	O.I.	H.G.	S.X.
0.46	58.4	0.97	Zm.12899.1.A1_at	CO531244	-	-	9e-1	At3g11750	dihydroneopterin aldolase, putative	O.I.	H.G.	S.X.
0.46	58.4	0.97	Zm.19091.1.S1_at	CO526991	fiber protein Fb2	-	2e+0	At3g06820	mov34 family protein	O.I.	H.G.	S.X.
0.46	58.4	0.94	Zm.16769.1.A1_at	CF634379	Hypothetical protein LOC100191855	-	5e-5	At1g04510	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.44	55.7	0.95	Zm.6039.1.A1_at	BG837895	-	-	9e-65	At5g03520	ATRAB8C	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.18417.1.A1_at	CO528437	RNA-binding region-containing protein 1	-	3e-1	At5g64400	-	O.I.	H.G.	S.X.
0.43	52.8	0.97	Zm.5388.1.S1_at	AW453245	hypothetical protein LOC100193632	-	6e-23	At3g09180	unknown protein	O.I.	H.G.	S.X.
0.42	51.3	0.96	ZmAffx.845.1.A1_at	AI770615	-	-	3e-2	At3g50980	XERO1 (DEHYDRIN XERO 1)	O.I.	H.G.	S.X.
0.41	49.7	0.95	Zm.2980.1.S1_at	AY112403.1	-	-	2e+0	At1g29140	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.12968.1.S1_at	CO528187	pyruvate dehydrogenase E1 component subunit beta	-	3e-62	At1g30120	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.8278.1.A1_at	CF636750	-	-	8e-1	At4g21920	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.19200.1.S1_at	CO517532	hypothetical protein LOC100276374	-	4e-2	At3g49660	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.2967.1.A1_at	AW119983	-	-	1e+0	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	O.I.	H.G.	S.X.
0.39	45.6	0.97	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.
0.39	45.6	0.96	Zm.4474.1.S1_at	CA402734	hypothetical protein LOC100279979	-	3e+0	At5g46720	-	O.I.	H.G.	S.X.
0.37	42.3	0.94	Zm.18434.1.A1_at	CF631178	hypothetical protein LOC100193586	-	3e+0	At4g19430	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.90	Zm.13351.1.S1_a_at	AA979911	protein kinase	-	2e-45	At4g26610	D6PKL1 (D6 PROTEIN KINASE LIKE 1)	O.I.	H.G.	S.X.
0.36	41.3	0.96	Zm.13565.2.S1_a_at	AI665019	-	-	3e+0	At3g25240	unknown protein	O.I.	H.G.	S.X.
0.35	38.9	0.97	Zm.6439.1.A1_at	AF076955.1	eucaryotic initiation factor7	-	3e-12	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.
0.35	38.9	0.97	Zm.19053.1.S1_at	CO523639	hypothetical protein LOC100193386	-	2e+0	Atmg01020	-	O.I.	H.G.	S.X.
0.34	37.2	0.96	Zm.6393.1.A1_x_at	BM267711	H1 histone	-	6e-1	At1g71290	F-box family protein-related	O.I.	H.G.	S.X.
0.33	36.0	0.93	Zm.12712.1.S1_at	CA404551	-	-	1e+0	At3g26400	EIF4B1	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.4006.1.A1_at	BQ539204	hypothetical protein LOC100216950	-	2e+0	At4g22530	embryo-abundant protein-related	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.14718.1.S1_at	CF009620	-	-	3e-21	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.32	33.4	0.98	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.
0.31	31.6	0.92	Zm.9431.1.A1_at	BM337524	-	-	1e+0	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.31	31.6	0.98	ZmAffx.240.1.S1_at	AI670252	-	-	3e+0	At5g11610	exostosin family protein	O.I.	H.G.	S.X.
0.31	31.6	0.98	Zm.4483.1.A1_at	CF051385	-	-	4e-1	At3g27580	ATPK7	O.I.	H.G.	S.X.
0.30	29.8	0.96	ZmAffx.1323.1.S1_at	40794996-34	-	-	2e-1	At5g28770	BZO2H3	O.I.	H.G.	S.X.
0.30	29.8	0.92	Zm.15331.1.S1_at	CB350880	hypothetical protein LOC100275547	-	5e-3	At5g19540	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	0.93	Zm.12018.1.A1_at	BM382690	-	-	2e+0	At1g72540	protein kinase, putative	O.I.	H.G.	S.X.
0.30	29.8	0.93	Zm.34.4.A1_x_at	AI667842	-	-	9e-1	At4g32780	phosphoinositide binding	O.I.	H.G.	S.X.
0.30	29.8	0.96	ZmAffx.711.1.A1_at	AI738325	-	-	5e-2	At5g12950	catalytic	O.I.	H.G.	S.X.
0.29	28.1	0.91	Zm.11876.1.A1_at	BM381446	-	-	5e+0	At1g03700	-	O.I.	H.G.	S.X.
0.29	28.1	0.93	Zm.6841.1.A1_at	BM267487	hypothetical protein LOC100273116	-	2e+0	At4g35030	protein kinase family protein	O.I.	H.G.	S.X.
0.29	28.1	0.95	Zm.14711.1.A1_at	CF625292	-	-	2e-10	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.
0.27	24.6	0.94	Zm.12623.1.S1_at	BQ620882	-	-	4e+0	At1g34640	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	0.94	Zm.6430.1.A1_at	AY111839.1	hypothetical protein LOC100277584	-	4e-1	At2g17880	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.16958.1.A1_a_at	AI665328	hypothetical protein LOC100193269	-	6e-4	At5g16130	40S ribosomal protein S7 (RPS7C)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.2 98.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8 96.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9 95.7 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9 93.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.12132.3.S1_a_at
Gene name	hypothetical protein LOC100192680
Homology with Arabidopsis	Similar to At5g03240: UBQ3 (POLYUBIQUITIN 3) (HF=4e-50)
Module size	6 genes
NF	0.66
%ile	88.0

Co-expression analysis

Gene ID Zm.12132.3.S1_a_at Gene name hypothetical protein LOC100192680 Homology with ArabidopsisSimilar to At5g03240: UBQ3 (POLYUBIQUITIN 3) (HF=4e-50) Module size 6 genes NF 0.66 %ile 88.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.12132.3.S1_a_at

Gene name hypothetical protein LOC100192680
Homology with Arabidopsis Similar to At5g03240: UBQ3 (POLYUBIQUITIN 3) (HF=4e-50)

Module size 6 genes

NF 0.66

%ile 88.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera