Co-expression analysis

Gene ID	Zm.12132.3.S1_a_at
Gene name	hypothetical protein LOC100192680
Homology with Arabidopsis	Similar to At5g03240: UBQ3 (POLYUBIQUITIN 3) (HF=4e-50)
Module size	6 genes
NF	0.66
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	ZmAffx.1074.1.S1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.43220.1.S1_at, orthologous to the query gene, Zm.12132.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	TaAffx.43220.1.S1_at	At5g03240	-	-	2e-70	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.63	83.1	TaAffx.24773.1.S1_at	At5g03240	-	-	1e+1	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.	Please select
0.62	82.3	TaAffx.65565.2.S1_at	At5g03240	-	-	3e-1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.17267.1.S1_at	At5g03240	-	-	3e-10	At5g17920	ATMS1	O.I.	H.G.	S.X.	Please select
0.57	79.2	TaAffx.105558.1.S1_x_at	At5g03240	-	-	9e-1	At2g28570	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.25400.1.A1_at	At5g03240	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	TaAffx.51251.1.S1_at	At5g03240	-	-	2e+0	At4g21500	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.18356.1.S1_at	At5g03240	-	-	3e+0	At1g48000	MYB112 (myb domain protein 112)	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.106849.3.S1_at	At5g03240	-	-	1e-1	At4g39410	WRKY13	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.84292.1.S1_at	At5g03240	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.17435.1.S1_at	At5g03240	-	-	7e+0	At4g22210	LCR85 (Low-molecular-weight cysteine-rich 85)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.24041.1.A1_x_at	At5g03240	-	-	1e+0	At4g36240	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.85651.1.S1_at	At5g03240	-	-	1e+1	At5g61430	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.1965.1.S1_at	At5g03240	-	-	6e-3	At4g23330	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.83097.1.S1_at	At5g03240	-	-	7e-2	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.30673.1.S1_at	At5g03240	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.19671.1.S1_at	At5g03240	-	-	2e+1	At5g11440	CID5	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.58533.1.S1_at	At5g03240	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.8469.1.S1_at	At5g03240	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.58638.1.S1_at	At5g03240	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.30013.1.S1_at	At5g03240	-	-	1e-18	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.10460.1.S1_at	At5g03240	-	-	3e+0	At3g54840	ARA6	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.9784.3.S1_x_at	At5g03240	-	-	4e+0	At2g22630	AGL17 (agamous-like 17)	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.3664.1.S1_at	At5g03240	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.55424.1.S1_at	At5g03240	-	-	2e-1	At2g38620	CDKB1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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