Co-expression analysis

Gene ID	Zm.12132.3.S1_a_at
Gene name	hypothetical protein LOC100192680
Homology with Arabidopsis	Similar to At5g03240: UBQ3 (POLYUBIQUITIN 3) (HF=4e-50)
Module size	6 genes
NF	0.66
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	ZmAffx.1074.1.S1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig1035_at, orthologous to the query gene, Zm.12132.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	Contig1035_at	At5g03240	-	-	6e-58	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig10799_at	At5g03240	-	-	4e-14	At5g38900	DSBA oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig19027_at	At5g03240	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig11674_at	At5g03240	-	-	3e-1	At5g49420	MADS-box protein (AGL84)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig14242_at	At5g03240	-	-	1e+0	At5g42800	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig15382_at	At5g03240	-	-	7e+0	Atmg00550	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig15126_at	At5g03240	-	-	5e-2	At1g04590	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig19923_at	At5g03240	-	-	3e-1	At4g26950	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig16664_at	At5g03240	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig423_at	At5g03240	-	-	5e-5	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig21277_at	At5g03240	-	-	8e-12	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig21025_at	At5g03240	-	-	7e-2	At2g16340	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig18011_at	At5g03240	-	-	2e-3	At3g60840	MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)	O.I.	H.G.	S.X.	Please select
0.26	30.4	HV_CEb0003J15r2_at	At5g03240	-	-	3e+0	At4g08878	inorganic phosphate transporter, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig13248_at	At5g03240	-	-	5e-4	At5g59590	UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)	O.I.	H.G.	S.X.	Please select
0.22	24.2	HVSMEc0019C19f_at	At5g03240	-	-	0	Atcg00020	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig7984_s_at	At5g03240	-	-	3e-1	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig15852_at	At5g03240	-	-	1e-33	At1g29940	NRPA2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage