Co-expression analysis

Gene ID Zm.12101.1.A1_at
Gene name hypothetical protein LOC100276199
Homology with ArabidopsisSimilar to At3g62770: AtATG18a (HF=8e-2)
Module size 6 genes
NF 0.40
%ile 46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.12101.1.A1_atAY106369.1hypothetical protein LOC100276199-8e-2At3g62770AtATG18aO.I.H.G.S.X.
0.5065.70.97ZmAffx.772.1.S1_atAI746167--3e+0At1g30840ATPUP4O.I.H.G.S.X.
0.4048.50.98Zm.12997.1.S1_atCA402647--2e-21At3g46740TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)O.I.H.G.S.X.
0.3131.60.98Zm.9290.1.A1_atAY108360.1hypothetical protein LOC100192546-7e-1At5g58260-O.I.H.G.S.X.
0.2419.80.97Zm.10135.1.A1_atBM381166--1e+0At5g47550cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.2419.80.97Zm.14792.1.A1_atAI666236--4e+0At3g62340WRKY68O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5976.10.97Zm.4392.2.A1_x_atAW787551Ran-related GTP binding protein-3e-63At5g20020RAN2O.I.H.G.S.X.
0.5571.60.95Zm.15997.1.S1_atCK368005hypothetical protein LOC100274725-2e-5At5g47570unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.2614.2.S1_atCD436098--2e+0At5g17930binding / protein bindingO.I.H.G.S.X.
0.4048.50.97Zm.8176.1.A1_atAY107848.1hypothetical protein LOC100280367-4e+0At4g04423endo-1,3(4)-beta-glucanaseO.I.H.G.S.X.
0.4048.50.98Zm.18133.1.A1_atAY103981.1--8e-38At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.H.G.S.X.
0.3844.20.97Zm.4146.1.S1_atCO527504hypothetical protein LOC100192740-1e-1At4g38370phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.3844.20.97Zm.18430.1.S1_atCO524429hypothetical protein LOC100272360-3e-9At1g03030phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.3641.30.95Zm.6815.1.A1_atAY105313.1hypothetical protein LOC100194295-3e-9At1g48605ATHAL3BO.I.H.G.S.X.
0.3641.30.97Zm.4383.1.S1_atBM078800hypothetical protein LOC100193621-4e-11At2g25950unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.13187.2.A1_atCF628617--1e+0At5g11860NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.3641.30.98Zm.17543.1.A1_atCK371034--6e+0At5g25240-O.I.H.G.S.X.
0.3538.90.98Zm.13417.1.A1_atCA400681hypothetical protein LOC100193979-4e-1At3g05830-O.I.H.G.S.X.
0.3336.00.97ZmAffx.362.1.S1_atAI670617--8e-1At1g56345pseudouridine synthase family proteinO.I.H.G.S.X.
0.3233.40.96ZmAffx.697.1.A1_atAI737808--3e+0At4g27745-O.I.H.G.S.X.
0.3233.40.96ZmAffx.1102.1.S1_atAW181177--8e-1At4g33560unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.9280.1.A1_atBM336932--1e+0At5g61900BON1 (BONZAI 1)O.I.H.G.S.X.
0.3131.60.97Zm.7781.1.S1_atAY104909.1--5e-8At2g22125bindingO.I.H.G.S.X.
0.3131.60.98Zm.6228.1.A1_atAI739920--1e+0At1g64370unknown proteinO.I.H.G.S.X.
0.3029.80.95Zm.17888.1.S1_atCK787196AN15-2e+0At2g40802unknown proteinO.I.H.G.S.X.
0.2928.10.96Zm.5362.1.A1_atAW498436hypothetical protein LOC100193109-1e-1At1g79860ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)O.I.H.G.S.X.
0.2928.10.97Zm.3630.1.A1_atBM380179--7e+0At5g15000-O.I.H.G.S.X.
0.2928.10.97Zm.2895.10.S1_a_atAI667767--7e-30At4g1432060S ribosomal protein L36a/L44 (RPL36aB)O.I.H.G.S.X.
0.2928.10.97Zm.5501.1.A1_atBM337994hypothetical protein LOC100194266-4e-2At1g55320AAE18 (ACYL-ACTIVATING ENZYME 18)O.I.H.G.S.X.
0.2828.10.95Zm.13311.1.A1_atAI461509--5e+0At4g04190unknown proteinO.I.H.G.S.X.
0.2828.10.97Zm.5180.1.A1_atAI612313--1e+1At5g27090AGL54O.I.H.G.S.X.
0.2724.60.95Zm.17108.1.S1_atCF972407hypothetical protein LOC100216670-8e-31At3g46830ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)O.I.H.G.S.X.
0.2724.60.97Zm.11238.1.A1_atBM340814--5e-3At5g39100GLP6 (GERMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.2521.30.94Zm.14069.2.A1_atAY110342.1--4e-1At2g33410heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeO.I.H.G.S.X.
0.2521.30.96Zm.2195.1.S1_atAY105504.1--4e+0At5g57565protein kinase family proteinO.I.H.G.S.X.
0.2521.30.97Zm.7282.1.A1_atAB016810.1ferredoxin2-3e-2At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.2521.30.97Zm.19212.1.A1_atAY110394.1--1e-1At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.198.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage