CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12101.1.A1_at

Gene name hypothetical protein LOC100276199
Homology with Arabidopsis Similar to At3g62770: AtATG18a (HF=8e-2)

Module size 6 genes

NF 0.40

%ile 46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.97 Zm.12101.1.A1_at AY106369.1 hypothetical protein LOC100276199 - 8e-2 At3g62770 AtATG18a O.I. H.G. S.X.
0.50 65.7 0.97 ZmAffx.772.1.S1_at AI746167 - - 3e+0 At1g30840 ATPUP4 O.I. H.G. S.X.
0.40 48.5 0.98 Zm.12997.1.S1_at CA402647 - - 2e-21 At3g46740 TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III) O.I. H.G. S.X.
0.31 31.6 0.98 Zm.9290.1.A1_at AY108360.1 hypothetical protein LOC100192546 - 7e-1 At5g58260 - O.I. H.G. S.X.
0.24 19.8 0.97 Zm.10135.1.A1_at BM381166 - - 1e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative O.I. H.G. S.X.
0.24 19.8 0.97 Zm.14792.1.A1_at AI666236 - - 4e+0 At3g62340 WRKY68 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.1 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6 98.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7 98.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM320458 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os09g0465500, orthologous to the query gene, Zm.12101.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 Os09g0465500 At3g62770 - Conserved hypothetical protein 2e+0 At2g40190 glycosyl transferase family 1 protein O.I. H.G. S.X.
0.71 89.6 Os07g0668700 At3g62770 - Lipase, class 3 family protein 3e-4 At5g18630 lipase class 3 family protein O.I. H.G. S.X.
0.08 4.2 Os01g0692600 At3g62770 - Conserved hypothetical protein 1e-3 At1g15060 - O.I. H.G. S.X.
0.04 2.0 Os07g0527800 At3g62770 - Ankyrin repeat containing protein 4e+0 At5g16800 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.03 1.4 Os09g0298700 At3g62770 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 7e+0 At5g65350 histone H3 O.I. H.G. S.X.
0.03 1.4 Os05g0432600 At3g62770 - Alpha/beta hydrolase fold domain containingprotein 3e-7 At5g49950 embryogenesis-associated protein-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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