Co-expression analysis

Gene ID	Zm.12101.1.A1_at
Gene name	hypothetical protein LOC100276199
Homology with Arabidopsis	Similar to At3g62770: AtATG18a (HF=8e-2)
Module size	6 genes
NF	0.40
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.12101.1.A1_at	AY106369.1	hypothetical protein LOC100276199	-	8e-2	At3g62770	AtATG18a	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	ZmAffx.772.1.S1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.10135.1.A1_at	BM381166	-	-	1e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.14792.1.A1_at	AI666236	-	-	4e+0	At3g62340	WRKY68	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig7792_s_at, orthologous to the query gene, Zm.12101.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	Contig7792_s_at	At3g62770	-	-	3e-2	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig7793_at	At3g62770	-	-	2e-2	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig21524_at	At3g62770	-	-	9e-1	At4g32150	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig12690_at	At3g62770	-	-	6e-2	At3g57850	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig3940_at	At3g62770	-	-	1e+0	At5g22100	RNA cyclase family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig9365_at	At3g62770	-	-	2e-4	At2g46210	delta-8 sphingolipid desaturase, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig7964_at	At3g62770	-	-	4e-2	At1g19140	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig10724_at	At3g62770	-	-	1e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig7908_at	At3g62770	-	-	3e-12	At2g41040	methyltransferase-related	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig16699_at	At3g62770	-	-	3e-1	At1g33640	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig6491_at	At3g62770	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig1223_at	At3g62770	aquaporin	-	6e-38	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig3848_at	At3g62770	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig9797_at	At3g62770	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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