Co-expression analysis

Gene ID	Zm.12093.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g24100: - (HF=6e+0)
Module size	7 genes
NF	0.17
%ile	11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.12093.1.A1_at	BM349818	-	-	6e+0	At3g24100	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	ZmAffx.199.1.S1_at	AI668491	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.19201.2.S1_a_at	CO526388	hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	ZmAffx.521.1.S1_at	AI711634	Hypothetical protein LOC100193955	-	3e+0	At5g27880	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.99	ZmAffx.994.1.S1_at	AI855283	sphingosine-1-phosphate lyase	-	3e+0	At5g11360	-	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.99	Zm.15442.1.A1_at	BM379425	Light-harvesting chlorophyll a/b binding protein	-	9e-37	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.99	Zm.13412.1.S1_x_at	CF630246	-	-	2e-7	At2g36230	APG10 (ALBINO AND PALE GREEN 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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