Co-expression analysis

Gene ID Zm.1204.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g10580: transducin family protein / WD-40 repeat family protein (HF=2e-2)
Module size 30 genes
NF 0.15
%ile 10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.90.90Zm.1204.1.S1_atBE519063--2e-2At1g10580transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3233.40.91Zm.9908.1.A1_atCF054801hypothetical protein LOC100277932-1e-37At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.3131.60.94Zm.14039.3.S1_a_atAF113521.1plasminogen activator inhibitor 1 RNA-binding protein-2e-3At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.2724.60.94Zm.7973.1.S1_atAY104213.1hypothetical protein LOC100273340-8e-9At2g35120glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.2622.70.93Zm.4227.1.A1_atCF625229TBC domain containing protein-3e-12At5g54780RAB GTPase activatorO.I.H.G.S.X.
0.2318.60.94Zm.8866.1.A1_atBM348347expansin-like 3-1e-2At4g38400ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)O.I.H.G.S.X.
0.1912.80.91Zm.10817.1.S1_x_atAF371275.122kD alpha zein3-3e-3At4g32930unknown proteinO.I.H.G.S.X.
0.1811.60.93Zm.14301.1.S1_atAI712237hypothetical protein LOC100192964-2e-22At3g61620RRP41O.I.H.G.S.X.
0.1811.60.97Zm.224.1.S1_atY17898.1outer cell layer1-1e-7At4g00730ANL2 (ANTHOCYANINLESS 2)O.I.H.G.S.X.
0.1710.60.93Zm.5787.2.S1_atAY107157.1hypothetical protein LOC100273050-4e-1At5g48790unknown proteinO.I.H.G.S.X.
0.169.40.91Zm.16505.1.A1_atBG841073hypothetical protein LOC100272368-0At5g56030HSP81-2 (HEAT SHOCK PROTEIN 81-2)O.I.H.G.S.X.
0.158.60.97Zm.5960.1.A1_atAI665953hypothetical protein LOC100277799-1e+1At5g65158-O.I.H.G.S.X.
0.158.60.97Zm.13310.1.S1_atCA827497--2e-5At1g65660SMP1 (SWELLMAP 1)O.I.H.G.S.X.
0.147.70.94Zm.473.1.S1_a_atU66608.1cyclin type B-like-2e-1At4g35620CYCB2O.I.H.G.S.X.
0.147.70.92Zm.14088.1.A1_atAY104037.1aconitate hydratase, cytoplasmic-4e-19At2g05710aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeO.I.H.G.S.X.
0.136.80.93Zm.8595.1.A1_atBM074847hypothetical protein LOC100277583-2e+0At3g29770MES11 (METHYL ESTERASE 11)O.I.H.G.S.X.
0.136.80.96Zm.7689.1.A1_a_atBM079495CDK-activating kinase assembly factor MAT1 family protein-2e+1Atmg01290-O.I.H.G.S.X.
0.125.90.97Zm.3289.1.A1_atAI979535--2e+0At3g16240DELTA-TIPO.I.H.G.S.X.
0.115.30.96Zm.2270.1.S1_atBF733079ATP-dependent Clp protease adaptor protein ClpS containing protein-4e-1At1g68660-O.I.H.G.S.X.
0.115.30.97Zm.2761.1.S1_atAW330892hypothetical protein LOC100279307-3e-3At1g43690ubiquitin interaction motif-containing proteinO.I.H.G.S.X.
0.115.30.96Zm.587.1.A1_atAF243043.1DNA cytosine methyltransferase MET2a-4e-1At1g69770CMT3 (chromomethylase 3)O.I.H.G.S.X.
0.104.60.97Zm.8992.2.A1_a_atAW066740hypothetical protein LOC100191900 /// glyceraldehyde-3-phosphate dehydrogenase, cytosolic-2e-25At1g79530GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)O.I.H.G.S.X.
0.104.60.93Zm.3899.1.A1_atAW061967hypothetical protein LOC100194083-6e-1At1g12810proline-rich family proteinO.I.H.G.S.X.
0.083.40.94Zm.4264.1.S1_atCA400096hypothetical protein LOC100193823 /// hypothetical protein LOC100274195 /// non-green plastid inner envelope membrane protein-4e+0At3g62790NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.083.40.92Zm.17471.1.S1_atCK368008--1e+0At4g32590ferredoxin-relatedO.I.H.G.S.X.
0.083.40.96Zm.1359.1.S1_atL20139.1male gametophyte-specific2-3e-6At3g01270pectate lyase family proteinO.I.H.G.S.X.
0.072.90.94Zm.11259.1.A1_atAI966828m19 protein-1e-2At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.062.30.94Zm.2700.1.A1_atAY107115.1mitotic checkpoint protein BUB3-2e-48At3g19590WD-40 repeat family protein / mitotic checkpoint protein, putativeO.I.H.G.S.X.
0.062.30.94Zm.12317.1.S1_atAY106969.1ethylene-responsive transcription factor 4-2e-12At5g44210ERF9 (ERF DOMAIN PROTEIN 9)O.I.H.G.S.X.
0.041.50.94Zm.6848.2.A1_atCF004955--9e-47At1g57720elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.198.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.098.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.090.2GSM206332Lower pulvinus 15 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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