Co-expression analysis

Gene ID Zm.12021.1.A1_at
Gene name hypothetical protein LOC100273474
Homology with ArabidopsisSimilar to At5g10140: FLC (FLOWERING LOCUS C) (HF=4e+0)
Module size 6 genes
NF 0.34
%ile 33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4658.40.95Zm.12021.1.A1_atBM382722hypothetical protein LOC100273474-4e+0At5g10140FLC (FLOWERING LOCUS C)O.I.H.G.S.X.
0.4658.40.96Zm.5565.1.S1_atD45402.1cysteine protease1-9e-11At4g39090RD19 (RESPONSIVE TO DEHYDRATION 19)O.I.H.G.S.X.
0.3538.90.97Zm.9236.1.A1_atBM339258--8e-2At3g01860unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.14307.1.S1_atBQ486034adenylate kinase-2e-1At2g39270adenylate kinase family proteinO.I.H.G.S.X.
0.2622.70.96Zm.5362.1.A1_atAW498436hypothetical protein LOC100193109-1e-1At1g79860ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)O.I.H.G.S.X.
0.2521.30.96Zm.6142.1.A1_atAY105151.1annexin p33-2e-1At5g10220ANN6 (ANNEXIN ARABIDOPSIS 6)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5775.10.92Zm.9966.1.A1_atAY107742.1hypothetical protein LOC100191214-1e-42At2g32980unknown proteinO.I.H.G.S.X.
0.5369.10.95Zm.19164.1.A1_atCO522564maspardin-4e-1At5g66360ribosomal RNA adenine dimethylase family proteinO.I.H.G.S.X.
0.5065.70.94Zm.6863.2.A1_a_atCF637783hypothetical protein LOC100193970-7e-67At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.
0.5065.70.94Zm.17951.1.A1_atCF630424--1e+0At5g16790-O.I.H.G.S.X.
0.5065.70.97Zm.13249.1.S1_a_atX98496.1embryo surrounding region1 /// ESR1c1 protein-7e-2At1g29380-O.I.H.G.S.X.
0.5065.70.97Zm.17166.1.A1_atCK370745--4e+0At5g65730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.4658.40.97Zm.4406.1.A1_atAI834053splicing factor, arginine/serine-rich 12-2e+0At2g26695binding / zinc ion bindingO.I.H.G.S.X.
0.4455.70.97Zm.6508.1.A1_atCF6378806-phosphofructokinase-7e-13At5g56630PFK7 (PHOSPHOFRUCTOKINASE 7)O.I.H.G.S.X.
0.4455.70.97Zm.871.1.A1_a_atBG316599--5e-4At3g06470GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.4048.50.94Zm.3090.1.S1_a_atAY104155.1hypothetical protein LOC100192770 /// USP family protein-2e-4At4g27320universal stress protein (USP) family proteinO.I.H.G.S.X.
0.4048.50.95Zm.10304.1.S1_atBM895485--6e+0At3g46660UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12)O.I.H.G.S.X.
0.4048.50.96Zm.1013.2.A1_atCK347213nucleic acid binding protein-4e-1At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3742.30.94Zm.15894.1.A1_atBG873874--3e-14At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.3641.30.94Zm.1332.1.S1_atBF729383--1e+0At1g18530calmodulin, putativeO.I.H.G.S.X.
0.3641.30.95Zm.4037.2.A1_atCF631049hypothetical protein LOC100272959 /// receptor-like protein kinase RK20-1-3e-2At4g05200protein kinase family proteinO.I.H.G.S.X.
0.3336.00.95Zm.3600.2.S1_a_atAF457970.16-phosphofructokinase-7e-5At4g26270PFK3 (PHOSPHOFRUCTOKINASE 3)O.I.H.G.S.X.
0.3131.60.90ZmAffx.1212.1.A1_atBU050629--6e-11At1g30410ATMRP13O.I.H.G.S.X.
0.2928.10.91Zm.13985.1.A1_atAY108836.1hypothetical protein LOC100276500-3e-1At3g60260phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.2928.10.96Zm.1934.1.S1_s_atAW519956hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase-3e+0At1g62770invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2724.60.92Zm.822.1.S1_atCO526761meiosis 5-2e+0At5g60490FLA12O.I.H.G.S.X.
0.2724.60.96Zm.13185.1.A1_atAY104045.1--1e-22At3g13060-O.I.H.G.S.X.
0.2724.60.93Zm.12082.2.A1_x_atCF636676hypothetical protein LOC100278326-4e+0At4g21216unknown proteinO.I.H.G.S.X.
0.2724.60.94Zm.5481.1.A1_atCO534121--7e-2At5g47455unknown proteinO.I.H.G.S.X.
0.2724.60.95Zm.3302.1.A1_atAY110608.1hypothetical protein LOC100276576-5e-1At5g04150BHLH101O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.997.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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