CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12021.1.A1_at

Gene name hypothetical protein LOC100273474
Homology with Arabidopsis Similar to At5g10140: FLC (FLOWERING LOCUS C) (HF=4e+0)

Module size 6 genes

NF 0.34

%ile 33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 58.4 0.95 Zm.12021.1.A1_at BM382722 hypothetical protein LOC100273474 - 4e+0 At5g10140 FLC (FLOWERING LOCUS C) O.I. H.G. S.X.
0.46 58.4 0.96 Zm.5565.1.S1_at D45402.1 cysteine protease1 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) O.I. H.G. S.X.
0.35 38.9 0.97 Zm.9236.1.A1_at BM339258 - - 8e-2 At3g01860 unknown protein O.I. H.G. S.X.
0.31 31.6 0.96 Zm.14307.1.S1_at BQ486034 adenylate kinase - 2e-1 At2g39270 adenylate kinase family protein O.I. H.G. S.X.
0.26 22.7 0.96 Zm.5362.1.A1_at AW498436 hypothetical protein LOC100193109 - 1e-1 At1g79860 ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12) O.I. H.G. S.X.
0.25 21.3 0.96 Zm.6142.1.A1_at AY105151.1 annexin p33 - 2e-1 At5g10220 ANN6 (ANNEXIN ARABIDOPSIS 6) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.46	58.4	0.95	Zm.12021.1.A1_at	BM382722	hypothetical protein LOC100273474	-	4e+0	At5g10140	FLC (FLOWERING LOCUS C)	O.I.	H.G.	S.X.
0.46	58.4	0.96	Zm.5565.1.S1_at	D45402.1	cysteine protease1	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.
0.35	38.9	0.97	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.96	Zm.14307.1.S1_at	BQ486034	adenylate kinase	-	2e-1	At2g39270	adenylate kinase family protein	O.I.	H.G.	S.X.
0.26	22.7	0.96	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.9 97.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3 97.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the rice gene, Os10g0330400, orthologous to the query gene, Zm.12021.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 Os10g0330400 At5g10140 - Protein of unknown function DUF179 family protein 6e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.54 71.9 Os11g0644800 At5g10140 - Tyrosine/nicotianamine aminotransferase familyprotein 1e-1 At2g23320 WRKY15 O.I. H.G. S.X.
0.51 68.7 Os06g0704700 At5g10140 - Conserved hypothetical protein 1e-34 At1g16720 HCF173 (high chlorophyll fluorescence phenotype 173) O.I. H.G. S.X.
0.51 68.7 Os09g0553900 At5g10140 - - 2e+0 At5g59040 COPT3 O.I. H.G. S.X.
0.48 63.7 Os04g0578400 At5g10140 - Beta-ring hydroxylase (Fragment) 5e-8 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.
0.48 63.7 Os01g0235100 At5g10140 - Conserved hypothetical protein 2e+0 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.
0.48 63.7 Os04g0583000 At5g10140 - TPR-like domain containing protein 7e-2 At4g02380 SAG21 (SENESCENCE-ASSOCIATED GENE 21) O.I. H.G. S.X.
0.47 62.3 Os03g0807900 At5g10140 - Conserved hypothetical protein 2e-16 At5g19855 unknown protein O.I. H.G. S.X.
0.45 58.8 Os12g0609500 At5g10140 - Short-chain dehydrogenase/reductase SDR familyprotein 1e-8 At4g20760 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.44 58.1 Os01g0235900 At5g10140 - Glutaredoxin domain containing protein 1e+1 At3g47140 F-box family protein-related O.I. H.G. S.X.
0.42 53.9 Os08g0440800 At5g10140 - Glyceraldehyde-3-phosphate dehydrogenase 3e-88 At4g23100 GSH1 (GLUTAMATE-CYSTEINE LIGASE) O.I. H.G. S.X.
0.42 53.9 Os07g0637300 At5g10140 - Pyruvate dehydrogenase kinase isoform 2 (EC2.7.1.99) 3e-25 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) O.I. H.G. S.X.
0.42 53.9 Os10g0560400 At5g10140 - CCT domain containing protein 1e-2 At3g26400 EIF4B1 O.I. H.G. S.X.
0.41 52.4 Os01g0281100 At5g10140 - Conserved hypothetical protein 3e+0 At4g22110 alcohol dehydrogenase, putative O.I. H.G. S.X.
0.40 51.1 Os03g0703300 At5g10140 - Calponin-like actin-binding domain containingprotein 1e+0 At2g47210 myb family transcription factor O.I. H.G. S.X.
0.37 45.0 Os03g0176700 At5g10140 - Hypothetical protein 3e+0 At5g65220 ribosomal protein L29 family protein O.I. H.G. S.X.
0.37 45.0 Os04g0578200 At5g10140 - Conserved hypothetical protein 6e-1 At3g12977 DNA binding O.I. H.G. S.X.
0.37 45.0 Os11g0216300 At5g10140 - ABC-1 domain containing protein 8e-76 At4g31390 ABC1 family protein O.I. H.G. S.X.
0.35 41.7 Os03g0594900 At5g10140 - Cytochrome P450 family protein 4e+0 At5g46030 unknown protein O.I. H.G. S.X.
0.35 41.7 Os11g0216100 At5g10140 - Heat shock protein DnaJ, N-terminal domaincontaining protein 5e-1 At2g28660 copper-binding family protein O.I. H.G. S.X.
0.35 41.7 Os01g0892600 At5g10140 - Pectinacetylesterase family protein 3e+0 At4g19420 pectinacetylesterase family protein O.I. H.G. S.X.
0.34 40.0 Os08g0566600 At5g10140 - Conserved hypothetical protein 3e-2 At2g05620 PGR5 (proton gradient regulation 5) O.I. H.G. S.X.
0.31 34.5 Os03g0639300 At5g10140 - BP-5 protein 3e-1 At4g28811 transcription regulator O.I. H.G. S.X.
0.27 27.5 Os01g0866400 At5g10140 - Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment) 8e-38 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative O.I. H.G. S.X.
0.24 22.4 Os12g0641300 At5g10140 - Conserved hypothetical protein 2e-3 At5g27720 emb1644 (embryo defective 1644) O.I. H.G. S.X.
0.22 19.4 Os10g0419500 At5g10140 - Acireductone dioxygenase, ARD family protein 2e-10 At5g43850 ARD4 O.I. H.G. S.X.
0.20 16.5 Os02g0610700 At5g10140 - Conserved hypothetical protein 4e-1 At2g32710 KRP4 O.I. H.G. S.X.
0.20 16.5 Os11g0432400 At5g10140 - 2-oxoglutarate/malate translocator 2e-13 At5g19760 dicarboxylate/tricarboxylate carrier (DTC) O.I. H.G. S.X.
0.19 15.1 Os08g0178800 At5g10140 - Hypothetical protein 2e+0 At1g54775 - O.I. H.G. S.X.
0.14 9.3 Os01g0725800 At5g10140 - Protein kinase family protein 3e-19 At2g47110 UBQ6 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	Os10g0330400	At5g10140	-	Protein of unknown function DUF179 family protein	6e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.54	71.9	Os11g0644800	At5g10140	-	Tyrosine/nicotianamine aminotransferase familyprotein	1e-1	At2g23320	WRKY15	O.I.	H.G.	S.X.
0.51	68.7	Os06g0704700	At5g10140	-	Conserved hypothetical protein	1e-34	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.
0.51	68.7	Os09g0553900	At5g10140	-	-	2e+0	At5g59040	COPT3	O.I.	H.G.	S.X.
0.48	63.7	Os04g0578400	At5g10140	-	Beta-ring hydroxylase (Fragment)	5e-8	At5g52570	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	O.I.	H.G.	S.X.
0.48	63.7	Os01g0235100	At5g10140	-	Conserved hypothetical protein	2e+0	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.
0.48	63.7	Os04g0583000	At5g10140	-	TPR-like domain containing protein	7e-2	At4g02380	SAG21 (SENESCENCE-ASSOCIATED GENE 21)	O.I.	H.G.	S.X.
0.47	62.3	Os03g0807900	At5g10140	-	Conserved hypothetical protein	2e-16	At5g19855	unknown protein	O.I.	H.G.	S.X.
0.45	58.8	Os12g0609500	At5g10140	-	Short-chain dehydrogenase/reductase SDR familyprotein	1e-8	At4g20760	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.44	58.1	Os01g0235900	At5g10140	-	Glutaredoxin domain containing protein	1e+1	At3g47140	F-box family protein-related	O.I.	H.G.	S.X.
0.42	53.9	Os08g0440800	At5g10140	-	Glyceraldehyde-3-phosphate dehydrogenase	3e-88	At4g23100	GSH1 (GLUTAMATE-CYSTEINE LIGASE)	O.I.	H.G.	S.X.
0.42	53.9	Os07g0637300	At5g10140	-	Pyruvate dehydrogenase kinase isoform 2 (EC2.7.1.99)	3e-25	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.
0.42	53.9	Os10g0560400	At5g10140	-	CCT domain containing protein	1e-2	At3g26400	EIF4B1	O.I.	H.G.	S.X.
0.41	52.4	Os01g0281100	At5g10140	-	Conserved hypothetical protein	3e+0	At4g22110	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.
0.40	51.1	Os03g0703300	At5g10140	-	Calponin-like actin-binding domain containingprotein	1e+0	At2g47210	myb family transcription factor	O.I.	H.G.	S.X.
0.37	45.0	Os03g0176700	At5g10140	-	Hypothetical protein	3e+0	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.
0.37	45.0	Os04g0578200	At5g10140	-	Conserved hypothetical protein	6e-1	At3g12977	DNA binding	O.I.	H.G.	S.X.
0.37	45.0	Os11g0216300	At5g10140	-	ABC-1 domain containing protein	8e-76	At4g31390	ABC1 family protein	O.I.	H.G.	S.X.
0.35	41.7	Os03g0594900	At5g10140	-	Cytochrome P450 family protein	4e+0	At5g46030	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	Os11g0216100	At5g10140	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	5e-1	At2g28660	copper-binding family protein	O.I.	H.G.	S.X.
0.35	41.7	Os01g0892600	At5g10140	-	Pectinacetylesterase family protein	3e+0	At4g19420	pectinacetylesterase family protein	O.I.	H.G.	S.X.
0.34	40.0	Os08g0566600	At5g10140	-	Conserved hypothetical protein	3e-2	At2g05620	PGR5 (proton gradient regulation 5)	O.I.	H.G.	S.X.
0.31	34.5	Os03g0639300	At5g10140	-	BP-5 protein	3e-1	At4g28811	transcription regulator	O.I.	H.G.	S.X.
0.27	27.5	Os01g0866400	At5g10140	-	Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment)	8e-38	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.
0.24	22.4	Os12g0641300	At5g10140	-	Conserved hypothetical protein	2e-3	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.
0.22	19.4	Os10g0419500	At5g10140	-	Acireductone dioxygenase, ARD family protein	2e-10	At5g43850	ARD4	O.I.	H.G.	S.X.
0.20	16.5	Os02g0610700	At5g10140	-	Conserved hypothetical protein	4e-1	At2g32710	KRP4	O.I.	H.G.	S.X.
0.20	16.5	Os11g0432400	At5g10140	-	2-oxoglutarate/malate translocator	2e-13	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	O.I.	H.G.	S.X.
0.19	15.1	Os08g0178800	At5g10140	-	Hypothetical protein	2e+0	At1g54775	-	O.I.	H.G.	S.X.
0.14	9.3	Os01g0725800	At5g10140	-	Protein kinase family protein	3e-19	At2g47110	UBQ6	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.12021.1.A1_at
Gene name	hypothetical protein LOC100273474
Homology with Arabidopsis	Similar to At5g10140: FLC (FLOWERING LOCUS C) (HF=4e+0)
Module size	6 genes
NF	0.34
%ile	33.9

Co-expression analysis

Gene ID Zm.12021.1.A1_at Gene name hypothetical protein LOC100273474 Homology with ArabidopsisSimilar to At5g10140: FLC (FLOWERING LOCUS C) (HF=4e+0) Module size 6 genes NF 0.34 %ile 33.9

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.12021.1.A1_at

Gene name hypothetical protein LOC100273474
Homology with Arabidopsis Similar to At5g10140: FLC (FLOWERING LOCUS C) (HF=4e+0)

Module size 6 genes

NF 0.34

%ile 33.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera