Co-expression analysis

Gene ID	Zm.12021.1.A1_at
Gene name	hypothetical protein LOC100273474
Homology with Arabidopsis	Similar to At5g10140: FLC (FLOWERING LOCUS C) (HF=4e+0)
Module size	6 genes
NF	0.34
%ile	33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	58.4	0.95	Zm.12021.1.A1_at	BM382722	hypothetical protein LOC100273474	-	4e+0	At5g10140	FLC (FLOWERING LOCUS C)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.5565.1.S1_at	D45402.1	cysteine protease1	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.14307.1.S1_at	BQ486034	adenylate kinase	-	2e-1	At2g39270	adenylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the barley gene, Contig9767_at, orthologous to the query gene, Zm.12021.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	Contig9767_at	At5g10140	-	-	3e+0	At3g04180	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig4566_at	At5g10140	-	-	3e+0	At4g32870	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig1382_at	At5g10140	-	-	5e-50	At2g29960	CYP5 (CYCLOPHILIN 5)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig647_at	At5g10140	-	-	3e-17	At4g29390	40S ribosomal protein S30 (RPS30B)	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig10540_at	At5g10140	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig13216_at	At5g10140	-	-	1e-5	At3g12620	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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