Co-expression analysis

Gene ID	Zm.11972.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g29690: transferase-related (HF=6e-2)
Module size	7 genes
NF	0.46
%ile	55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.89	Zm.11972.1.A1_at	BM382270	-	-	6e-2	At3g29690	transferase-related	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.89	Zm.14971.1.S1_at	AW424712	-	-	4e+0	At4g20420	tapetum-specific protein-related	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.89	Zm.14973.1.A1_at	BM075591	hypothetical protein LOC100275738	-	1e-9	At1g10280	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.89	Zm.15667.1.A1_at	CD437700	-	-	1e+0	At5g43280	ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.91	ZmAffx.786.1.S1_at	AI759096	-	-	3e-3	At1g72450	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.89	Zm.8778.1.A1_at	BM075597	hypothetical protein LOC100191790	-	1e+0	At3g29152	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.92	Zm.3977.1.A1_at	CF627326	pre-mRNA-splicing factor SF2	-	2e-16	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
12.3	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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