Co-expression analysis

Gene ID Zm.11939.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g14350: SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) (HF=7e-21)
Module size 7 genes
NF 0.17
%ile 11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.90Zm.11939.1.A1_atCF624620--7e-21At3g14350SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)O.I.H.G.S.X.
0.3131.60.94Zm.9219.1.A1_a_atBM350438hypothetical protein LOC100275751-3e-1At1g77340pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2521.30.91Zm.2190.1.A1_atBG841211hypothetical protein LOC100276270-6e+0At5g05930guanylyl cyclase-related (GC1)O.I.H.G.S.X.
0.2216.90.94Zm.18077.1.S1_atCO530287hypothetical protein LOC100193986-4e-8At1g08570ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)O.I.H.G.S.X.
0.158.60.92Zm.17794.1.S1_atCK371286hypothetical protein LOC100274149-6e-6At4g18230-O.I.H.G.S.X.
0.094.00.91Zm.3373.1.A1_atCK827225--1e+1At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)O.I.H.G.S.X.
0.051.90.91Zm.19167.2.A1_x_atCF636656Hypothetical protein LOC100194096-9e+0At4g13160unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.598.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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