Co-expression analysis

Gene ID Zm.11891.1.A1_at
Gene name helix-loop-helix DNA-binding domain containing protein
Homology with ArabidopsisSimilar to At5g42420: transporter-related (HF=6e-2)
Module size 6 genes
NF 0.42
%ile 48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedO.I.H.G.S.X.
0.5369.10.99Zm.9079.1.A1_atCN844993hypothetical protein LOC100217287-6e-3At1g13890SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)O.I.H.G.S.X.
0.4658.40.99Zm.11781.1.A1_atBM380704--1e+0At4g40090AGP3 (arabinogalactan-protein 3)O.I.H.G.S.X.
0.3336.00.99Zm.1247.1.S1_atBE575051EARLY flowering 4 protein-4e+0At3g17570F-box family proteinO.I.H.G.S.X.
0.3029.80.99Zm.12384.1.A1_atAY111304.1--5e-4At3g23340ckl10 (Casein Kinase I-like 10)O.I.H.G.S.X.
0.2724.60.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5065.70.99Zm.17089.1.A1_atBM350286hypothetical protein LOC100275932-3e-1At1g62850-O.I.H.G.S.X.
0.5065.70.99Zm.6821.1.A1_atAI396519hypothetical protein LOC100272815-7e+0At3g44805-O.I.H.G.S.X.
0.5065.71.00Zm.13345.2.A1_x_atCD435730hypothetical protein LOC100279020-2e+0At5g62360invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4048.50.99ZmAffx.1434.1.S1_at11990232-19--0Atcg00120-O.I.H.G.S.X.
0.4048.50.99Zm.18300.1.A1_atCO527784hypothetical protein LOC100273748-5e-1At3g50690leucine-rich repeat family proteinO.I.H.G.S.X.
0.4048.50.99Zm.2310.1.S1_atCK371642--3e+0At3g56070ROC2 (ROTAMASE CYCLOPHILIN 2)O.I.H.G.S.X.
0.3844.20.99Zm.9859.1.A1_atBM349366--4e+0At2g43920thiol methyltransferase, putativeO.I.H.G.S.X.
0.3844.20.99Zm.10128.2.S1_x_atBM378587--3e+0At2g38540LP1O.I.H.G.S.X.
0.3641.30.98Zm.9799.1.S1_atAY111917.1Hypothetical protein LOC100217145-1e+0At4g34870ROC5 (ROTAMASE CYCLOPHILIN 5)O.I.H.G.S.X.
0.3641.30.99Zm.8097.1.A1_atBM336868--2e+0At3g21940receptor protein kinase-relatedO.I.H.G.S.X.
0.3538.90.99Zm.2267.1.S1_atAY105804.1--7e-7At1g79860ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)O.I.H.G.S.X.
0.3336.00.99Zm.9524.1.A1_atBM276789hypothetical protein LOC100277965-2e+0At4g23610unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.8255.1.A1_atBM073418hypothetical protein LOC100277720-4e-1At3g55790unknown proteinO.I.H.G.S.X.
0.3233.40.98ZmAffx.127.1.S1_atAI665981--8e-1At1g16430surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.3233.40.99Zm.17334.1.A1_atCK370011--1e+1Atcg00420-O.I.H.G.S.X.
0.3131.60.99Zm.17842.1.S1_atCK787020calcium-dependent protein kinase, isoform AK1-3e-11At5g12480CPK7 (calmodulin-domain protein kinase 7)O.I.H.G.S.X.
0.3029.80.99Zm.17844.1.A1_atBG873843hypothetical protein LOC100273210-1e+0At4g39150DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2928.10.99Zm.13919.1.S1_atAF057523.1hypoxically induced transcript 3-5e+0At5g04210RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2928.10.99Zm.8774.1.A1_atBM075843--5e+0At5g20100unknown proteinO.I.H.G.S.X.
0.2928.10.99ZmAffx.1427.1.S1_at11990232-12--5e-170Atcg00190-O.I.H.G.S.X.
0.2724.60.99Zm.13919.1.A1_atAF057523.1hypoxically induced transcript 3-5e+0At5g04210RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2724.60.98Zm.9810.1.A1_a_atBM332775hypothetical protein LOC100274769-6e-2At4g05340ATP bindingO.I.H.G.S.X.
0.2724.60.99ZmAffx.846.1.A1_atAI770616--2e+0At3g58150-O.I.H.G.S.X.
0.2724.60.99Zm.14026.1.S1_atAY104736.1hypothetical protein LOC100194188-4e-46At1g71830SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)O.I.H.G.S.X.
0.2622.70.98Zm.12345.1.A1_a_atBM416967mediator complex subunit 10 CG5057-PA-2e-3At1g26665-O.I.H.G.S.X.
0.2622.70.98ZmAffx.844.1.S1_atAI770609--1e-1At5g59820RHL41 (RESPONSIVE TO HIGH LIGHT 41)O.I.H.G.S.X.
0.2521.30.98Zm.13920.1.S1_atAJ006055.1glutathione reductase-2e-10At3g54660GR (GLUTATHIONE REDUCTASE)O.I.H.G.S.X.
0.2521.30.99Zm.11694.1.A1_atCK369414R2R3MYB-domain protein-2e-5At3g12820AtMYB10 (myb domain protein 10)O.I.H.G.S.X.
0.2521.30.99Zm.30.1.S1_a_atAF371264.115kD beta zein /// prolamin PPROL 17 /// 15 kDa zein protein-2e-1At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.397.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM253269ZM_4.5d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.697.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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