Co-expression analysis

Gene ID	Zm.11891.1.A1_at
Gene name	helix-loop-helix DNA-binding domain containing protein
Homology with Arabidopsis	Similar to At5g42420: transporter-related (HF=6e-2)
Module size	6 genes
NF	0.42
%ile	48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.99	Zm.11891.1.A1_at	BM381583	helix-loop-helix DNA-binding domain containing protein	-	6e-2	At5g42420	transporter-related	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.9079.1.A1_at	CN844993	hypothetical protein LOC100217287	-	6e-3	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.11781.1.A1_at	BM380704	-	-	1e+0	At4g40090	AGP3 (arabinogalactan-protein 3)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.1247.1.S1_at	BE575051	EARLY flowering 4 protein	-	4e+0	At3g17570	F-box family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.99	Zm.12384.1.A1_at	AY111304.1	-	-	5e-4	At3g23340	ckl10 (Casein Kinase I-like 10)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.99	Zm.16578.1.A1_a_at	CK369163	-	-	3e-1	At5g37820	NIP4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the grape gene, 1620337_at, orthologous to the query gene, Zm.11891.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	1620337_at	At5g42420	similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel	-	2e-5	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1614181_at	At5g42420	hypothetical protein LOC100263351	-	1e-1	At1g34320	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1616997_s_at	At5g42420	hypothetical protein LOC100261822	-	0	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614866_at	At5g42420	hypothetical protein LOC100251829	-	9e-28	At1g55255	-	O.I.	H.G.	S.X.	Please select
0.32	43.1	1612637_at	At5g42420	hypothetical protein LOC100259097	-	2e-3	At5g13390	NEF1 (NO EXINE FORMATION 1)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1620044_s_at	At5g42420	hypothetical protein LOC100247307	-	7e-8	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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