| Gene ID | Zm.11891.1.A1_at |
| Gene name | helix-loop-helix DNA-binding domain containing protein |
| Homology with Arabidopsis | Similar to At5g42420: transporter-related (HF=6e-2) |
| Module size | 6 genes |
| NF | 0.42 |
| %ile | 48.4 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.50 | 65.7 | 0.99 | Zm.11891.1.A1_at | BM381583 | helix-loop-helix DNA-binding domain containing protein | - | 6e-2 | At5g42420 | transporter-related | O.I. | H.G. | S.X. | |
| 0.53 | 69.1 | 0.99 | Zm.9079.1.A1_at | CN844993 | hypothetical protein LOC100217287 | - | 6e-3 | At1g13890 | SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) | O.I. | H.G. | S.X. | |
| 0.46 | 58.4 | 0.99 | Zm.11781.1.A1_at | BM380704 | - | - | 1e+0 | At4g40090 | AGP3 (arabinogalactan-protein 3) | O.I. | H.G. | S.X. | |
| 0.33 | 36.0 | 0.99 | Zm.1247.1.S1_at | BE575051 | EARLY flowering 4 protein | - | 4e+0 | At3g17570 | F-box family protein | O.I. | H.G. | S.X. | |
| 0.30 | 29.8 | 0.99 | Zm.12384.1.A1_at | AY111304.1 | - | - | 5e-4 | At3g23340 | ckl10 (Casein Kinase I-like 10) | O.I. | H.G. | S.X. | |
| 0.27 | 24.6 | 0.99 | Zm.16578.1.A1_a_at | CK369163 | - | - | 3e-1 | At5g37820 | NIP4 | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 7.3 | 97.8 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.9 | 97.7 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.7 | 97.6 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.4 | 97.5 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.3 | 97.4 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.8 | 97.2 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.8 | 97.2 | GSM253269 | ZM_4.5d_Mock_3inf_II | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| 5.6 | 97.1 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.5 | 97.1 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.5 | 97.1 | GSM253270 | ZM_4.5d_Mock_3inf_III | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.91 | 98.2 | TaAffx.25322.1.S1_at | At5g42420 | - | - | 1e+0 | At5g61270 | PIF7 (PHYTOCHROME-INTERACTING FACTOR7) | O.I. | H.G. | S.X. | |
| 0.67 | 86.3 | Ta.659.4.S1_a_at | At5g42420 | - | - | 0 | At1g07920 | elongation factor 1-alpha / EF-1-alpha | O.I. | H.G. | S.X. | |
| 0.61 | 82.0 | Ta.27117.2.S1_a_at | At5g42420 | - | - | 2e-15 | At2g40205 | 60S ribosomal protein L41 (RPL41C) | O.I. | H.G. | S.X. | |
| 0.55 | 76.8 | Ta.27117.6.S1_x_at | At5g42420 | - | - | 1e-12 | At3g08520 | 60S ribosomal protein L41 (RPL41D) | O.I. | H.G. | S.X. | |
| 0.53 | 74.9 | Ta.659.7.A1_x_at | At5g42420 | - | - | 1e-161 | At1g07920 | elongation factor 1-alpha / EF-1-alpha | O.I. | H.G. | S.X. | |
| 0.46 | 66.8 | Ta.659.6.S1_x_at | At5g42420 | - | - | 0 | At1g07920 | elongation factor 1-alpha / EF-1-alpha | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Oryza_sativa |
| Populus_trichocarpa |
| Vitis_vinifera |
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