Co-expression analysis

Gene ID Zm.11891.1.A1_at
Gene name helix-loop-helix DNA-binding domain containing protein
Homology with ArabidopsisSimilar to At5g42420: transporter-related (HF=6e-2)
Module size 6 genes
NF 0.42
%ile 48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedO.I.H.G.S.X.
0.5369.10.99Zm.9079.1.A1_atCN844993hypothetical protein LOC100217287-6e-3At1g13890SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)O.I.H.G.S.X.
0.4658.40.99Zm.11781.1.A1_atBM380704--1e+0At4g40090AGP3 (arabinogalactan-protein 3)O.I.H.G.S.X.
0.3336.00.99Zm.1247.1.S1_atBE575051EARLY flowering 4 protein-4e+0At3g17570F-box family proteinO.I.H.G.S.X.
0.3029.80.99Zm.12384.1.A1_atAY111304.1--5e-4At3g23340ckl10 (Casein Kinase I-like 10)O.I.H.G.S.X.
0.2724.60.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.397.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM253269ZM_4.5d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.697.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.28965.1.S1_at, orthologous to the query gene, Zm.11891.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8997.8PtpAffx.28965.1.S1_atAt5g42420--7e-1At3g56850AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)O.I.H.G.S.X.
0.4369.7PtpAffx.203676.1.S1_atAt5g42420calcium dependent protein kinase 15-1e-51At4g04720CPK21O.I.H.G.S.X.
0.3964.6PtpAffx.152776.1.S1_atAt5g42420hypothetical protein-5e-28At1g24764ATMAP70-2 (microtubule-associated proteins 70-2)O.I.H.G.S.X.
0.3661.6PtpAffx.211375.1.S1_s_atAt5g42420hypothetical protein-4e-9At2g42520DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.3458.3Ptp.7706.2.A1_atAt5g42420hypothetical protein-2e-6At5g42920unknown proteinO.I.H.G.S.X.
0.3255.2Ptp.4755.1.S1_atAt5g42420hypothetical protein-4e-1At1g14450unknown proteinO.I.H.G.S.X.
0.2950.5PtpAffx.209161.1.S1_x_atAt5g42420hypothetical protein-1e-8At1g14170KH domain-containing proteinO.I.H.G.S.X.
0.2850.5PtpAffx.26553.1.A1_atAt5g42420hypothetical protein-5e+0At4g28270zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2850.5Ptp.5762.1.S1_atAt5g42420ebs-bah-phd domain-containing protein-2e-46At4g22140DNA binding / protein binding / zinc ion bindingO.I.H.G.S.X.
0.2747.1PtpAffx.124592.1.S1_s_atAt5g42420hypothetical protein-2e+0At5g40500unknown proteinO.I.H.G.S.X.
0.2747.1PtpAffx.225000.1.S1_atAt5g42420hypothetical protein-1e-86At5g45160root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.2645.2PtpAffx.204540.1.S1_atAt5g42420hypothetical protein-2e-2At4g38670pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.2543.6PtpAffx.103673.1.A1_atAt5g42420--1e+0At5g57750zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2441.8PtpAffx.214232.1.S1_s_atAt5g42420hypothetical protein-1e-16At5g54830DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing proteinO.I.H.G.S.X.
0.2441.8PtpAffx.118799.1.S1_s_atAt5g42420hypothetical protein-3e-10At2g40930UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)O.I.H.G.S.X.
0.2340.5PtpAffx.4020.2.S1_s_atAt5g42420hypothetical protein-9e-39At1g31780-O.I.H.G.S.X.
0.2034.6PtpAffx.26458.1.A1_atAt5g42420hypothetical protein-1e+0At1g55365unknown proteinO.I.H.G.S.X.
0.1830.8PtpAffx.148326.1.S1_s_atAt5g42420PAF1 complex component-2e-6At1g61040VIP5 (vernalization independence 5)O.I.H.G.S.X.
0.1729.1PtpAffx.79842.1.S1_atAt5g42420hypothetical protein-6e-9At3g43700ATBPM6 (BTB-POZ and MATH domain 6)O.I.H.G.S.X.
0.1626.9PtpAffx.130895.1.S1_atAt5g42420hypothetical protein-2e-50At2g32170-O.I.H.G.S.X.
0.1423.5PtpAffx.126112.1.S1_s_atAt5g42420hypothetical protein-3e-109At5g11490adaptin family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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