| Gene ID | Zm.11891.1.A1_at |
| Gene name | helix-loop-helix DNA-binding domain containing protein |
| Homology with Arabidopsis | Similar to At5g42420: transporter-related (HF=6e-2) |
| Module size | 6 genes |
| NF | 0.42 |
| %ile | 48.4 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.50 | 65.7 | 0.99 | Zm.11891.1.A1_at | BM381583 | helix-loop-helix DNA-binding domain containing protein | - | 6e-2 | At5g42420 | transporter-related | O.I. | H.G. | S.X. | |
| 0.53 | 69.1 | 0.99 | Zm.9079.1.A1_at | CN844993 | hypothetical protein LOC100217287 | - | 6e-3 | At1g13890 | SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) | O.I. | H.G. | S.X. | |
| 0.46 | 58.4 | 0.99 | Zm.11781.1.A1_at | BM380704 | - | - | 1e+0 | At4g40090 | AGP3 (arabinogalactan-protein 3) | O.I. | H.G. | S.X. | |
| 0.33 | 36.0 | 0.99 | Zm.1247.1.S1_at | BE575051 | EARLY flowering 4 protein | - | 4e+0 | At3g17570 | F-box family protein | O.I. | H.G. | S.X. | |
| 0.30 | 29.8 | 0.99 | Zm.12384.1.A1_at | AY111304.1 | - | - | 5e-4 | At3g23340 | ckl10 (Casein Kinase I-like 10) | O.I. | H.G. | S.X. | |
| 0.27 | 24.6 | 0.99 | Zm.16578.1.A1_a_at | CK369163 | - | - | 3e-1 | At5g37820 | NIP4 | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 7.3 | 97.8 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.9 | 97.7 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.7 | 97.6 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.4 | 97.5 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.3 | 97.4 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.8 | 97.2 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.8 | 97.2 | GSM253269 | ZM_4.5d_Mock_3inf_II | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| 5.6 | 97.1 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.5 | 97.1 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.5 | 97.1 | GSM253270 | ZM_4.5d_Mock_3inf_III | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.44 | 63.3 | PsAffx.C19000133_at | At5g42420 | - | - | 6e-2 | At1g49400 | emb1129 (embryo defective 1129) | O.I. | H.G. | S.X. | |
| 0.53 | 74.2 | HgAffx.14720.1.A1_at | At5g42420 | - | - | 2e-1 | At1g66360 | C2 domain-containing protein | O.I. | H.G. | S.X. | |
| 0.43 | 60.6 | GmaAffx.10787.1.S1_at | At5g42420 | - | - | 1e-2 | At5g16790 | - | O.I. | H.G. | S.X. | |
| 0.40 | 57.1 | HgAffx.17965.1.S1_at | At5g42420 | - | - | 2e+0 | At2g23340 | AP2 domain-containing transcription factor, putative | O.I. | H.G. | S.X. | |
| 0.35 | 48.6 | HgAffx.17984.1.S1_at | At5g42420 | - | - | 3e+0 | At3g24860 | hydroxyproline-rich glycoprotein family protein | O.I. | H.G. | S.X. | |
| 0.27 | 35.7 | HgAffx.19033.4.A1_at | At5g42420 | - | - | 6e-2 | At1g54410 | dehydrin family protein | O.I. | H.G. | S.X. | |
| 0.05 | 8.0 | GmaAffx.12608.1.A1_at | At5g42420 | - | - | 2e-1 | At3g46380 | unknown protein | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Hordeum_vulgare |
| Oryza_sativa |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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