Co-expression analysis

Gene ID	Zm.11872.1.A1_at
Gene name	metal ion binding protein
Homology with Arabidopsis	Similar to At4g39700: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (HF=7e-2)
Module size	7 genes
NF	0.53
%ile	69.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.11872.1.A1_at	BM381418	metal ion binding protein	-	7e-2	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.3134.2.S1_at	AI770607	aldehyde dehydrogenase 3B1	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.5788.1.A1_at	AI600957	hypothetical protein LOC100280278	-	5e+0	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.7012.7.A1_a_at	AI881466	ribosomal protein S8	-	1e-55	At5g59240	40S ribosomal protein S8 (RPS8B)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5539.1.A1_at	BG842565	hypothetical protein LOC100276652	-	5e+0	At5g03090	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.6560.1.S1_at	Z29518.1	phospholipid synthesis1	-	8e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.6558.1.S1_at	AF073329.1	eukaryotic initiation factor3	-	1e-10	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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