Co-expression analysis

Gene ID	Zm.11819.1.A1_at
Gene name	protein kinase domain containing protein
Homology with Arabidopsis	Similar to At2g35700: ERF38 (ERF FAMILY PROTEIN 38) (HF=4e-1)
Module size	10 genes
NF	0.12
%ile	7.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.5	0.91	Zm.11819.1.A1_at	CO518214	protein kinase domain containing protein	-	4e-1	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.3176.1.S1_at	CD969390	hypothetical protein LOC100272855	-	5e-49	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.4096.2.A1_at	AY110537.1	-	-	7e-4	At3g15430	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.93	Zm.17594.1.S1_at	CA402152	hypothetical protein LOC100276455	-	6e-1	At1g74520	ATHVA22A	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.94	Zm.19316.1.A1_at	CO523375	-	-	1e+0	At3g05860	MADS-box protein (AGL45)	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.96	Zm.7793.1.A1_at	BM079938	-	-	1e+0	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.95	Zm.4497.1.A1_at	BM336128	hypothetical protein LOC100193897	-	7e-1	At2g20940	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.95	Zm.3321.1.A1_a_at	AI629966	vacuolar sorting receptor homolog	-	2e-4	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.93	Zm.12208.1.A1_at	BM736144	-	-	3e-4	At3g14630	CYP72A9	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.95	Zm.13701.1.A1_at	AY106667.1	hypothetical protein LOC100274153	-	1e-14	At5g03940	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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