Co-expression analysis

Gene ID	Zm.11783.1.A1_at
Gene name	hypothetical protein LOC100191487
Homology with Arabidopsis	Similar to At5g42510: disease resistance-responsive family protein (HF=4e+0)
Module size	6 genes
NF	0.71
%ile	92.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.11783.1.A1_at	BM380733	hypothetical protein LOC100191487	-	4e+0	At5g42510	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.97	Zm.2784.1.A1_at	CF629950	hypothetical protein LOC100276915	-	5e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.2901.1.A1_at	BM351614	hypothetical protein LOC100277716	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.11378.1.A1_at	CB351158	hypothetical protein LOC100272914	-	6e-1	At5g06610	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.6948.1.A1_at	AW288752	serine/threonine-protein phosphatase PP1	-	8e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the grape gene, 1615138_at, orthologous to the query gene, Zm.11783.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1615138_at	At5g42510	-	-	6e-2	At1g78260	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1616597_at	At5g42510	hypothetical protein LOC100245682	-	2e-1	At4g16140	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1610620_s_at	At5g42510	hypothetical protein LOC100266746	-	5e+0	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1607488_at	At5g42510	hypothetical protein LOC100245682	-	1e+0	At3g06985	LCR44 (Low-molecular-weight cysteine-rich 44)	O.I.	H.G.	S.X.	Please select
0.06	6.8	1620485_at	At5g42510	hypothetical protein LOC100242692	-	3e-1	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1606696_s_at	At5g42510	hypothetical protein LOC100241006	-	5e-13	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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