Co-expression analysis

Gene ID	Zm.11783.1.A1_at
Gene name	hypothetical protein LOC100191487
Homology with Arabidopsis	Similar to At5g42510: disease resistance-responsive family protein (HF=4e+0)
Module size	6 genes
NF	0.71
%ile	92.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.11783.1.A1_at	BM380733	hypothetical protein LOC100191487	-	4e+0	At5g42510	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.97	Zm.2784.1.A1_at	CF629950	hypothetical protein LOC100276915	-	5e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.2901.1.A1_at	BM351614	hypothetical protein LOC100277716	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.11378.1.A1_at	CB351158	hypothetical protein LOC100272914	-	6e-1	At5g06610	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.6948.1.A1_at	AW288752	serine/threonine-protein phosphatase PP1	-	8e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.225894.1.S1_at, orthologous to the query gene, Zm.11783.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	PtpAffx.225894.1.S1_at	At5g42510	hypothetical protein	-	6e-1	At5g01445	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	Ptp.3836.1.A1_at	At5g42510	hypothetical protein	-	1e-5	At1g14590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.222493.1.S1_at	At5g42510	hypothetical protein	-	1e-35	At2g17220	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.224441.1.S1_at	At5g42510	cytochrome P450	-	1e-2	At4g15360	CYP705A3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.12244.1.A1_at	At5g42510	hypothetical protein	-	5e-4	At3g25770	AOC2 (ALLENE OXIDE CYCLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.210121.1.S1_s_at	At5g42510	caffeic acid 3-O-methyltransferase	-	1e-1	At1g33030	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.75349.1.A1_at	At5g42510	-	-	2e+0	At4g12720	NUDT7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.33399.1.S1_at	At5g42510	hypothetical protein	-	1e-1	At2g14288	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.64556.1.A1_at	At5g42510	hypothetical protein	-	3e-22	At5g54310	AGD5 (ARF-GAP domain 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.216911.1.S1_at	At5g42510	hypothetical protein	-	5e-23	At5g15730	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.71504.1.S1_at	At5g42510	hypothetical protein	-	4e-1	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.204347.1.S1_s_at	At5g42510	hypothetical protein	-	4e-18	At1g20550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.208262.1.S1_at	At5g42510	hypothetical protein	-	6e-17	At3g26090	RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.100290.2.S1_at	At5g42510	f-box family protein /// f-box family protein	-	6e+0	At5g09270	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.221157.1.S1_at	At5g42510	hypothetical protein	-	8e-21	At5g66850	MAPKKK5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.73050.1.S1_s_at	At5g42510	hypothetical protein	-	3e-29	At4g38730	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.76902.1.S1_at	At5g42510	hypothetical protein	-	2e-22	At5g57700	BNR/Asp-box repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.211009.1.S1_at	At5g42510	hypothetical protein	-	3e-2	At3g61400	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.213326.1.S1_at	At5g42510	hypothetical protein	-	2e-32	At1g51340	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.218266.1.S1_s_at	At5g42510	hypothetical protein	-	4e-5	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.3678.1.A1_at	At5g42510	hypothetical protein	-	1e-9	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.204864.1.S1_at	At5g42510	hypothetical protein	-	5e-7	At5g55380	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.223108.1.S1_at	At5g42510	hypothetical protein	-	2e-1	At1g66460	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.203973.1.S1_at	At5g42510	hypothetical protein	-	4e-41	At3g03380	DegP7 (DegP protease 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.204347.1.S1_at	At5g42510	hypothetical protein	-	4e-18	At1g20550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage