Co-expression analysis

Gene ID	Zm.11778.1.A1_at
Gene name	hypothetical protein LOC100274745
Homology with Arabidopsis	Similar to At1g11920: pectate lyase family protein (HF=1e+0)
Module size	6 genes
NF	0.28
%ile	24.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.86	Zm.11778.1.A1_at	BM380652	hypothetical protein LOC100274745	-	1e+0	At1g11920	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.86	Zm.1090.2.A1_a_at	BU645209	PVR3-like protein /// PVR3-like protein /// PVR3-like protein	-	1e+0	At3g23930	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.87	Zm.8743.1.A1_at	BM347268	blue copper protein	-	1e-1	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.91	Zm.18064.1.A1_at	CK347702	-	-	1e+0	At1g66145	CLE18 (CLAVATA3/ESR-RELATED 18)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.86	Zm.2376.1.A1_x_at	AF001634.1	physical impedance induced protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.86	Zm.8061.1.S1_at	BM334048	hypothetical protein LOC100276971	-	9e-8	At2g30942	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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