CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.11765.1.A1_at

Gene name galactosyltransferase/ transferase, transferring hexosyl groups
Homology with Arabidopsis Similar to At4g21060: galactosyltransferase family protein (HF=7e-6)

Module size 6 genes

NF 0.11

%ile 6.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 0.91 Zm.11765.1.A1_at CD441156 galactosyltransferase/ transferase, transferring hexosyl groups - 7e-6 At4g21060 galactosyltransferase family protein O.I. H.G. S.X.
0.44 55.7 0.90 Zm.17936.1.S1_at CO518729 protein binding protein - 6e-14 At3g47990 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.21 15.5 0.91 Zm.11819.1.A1_at CO518214 protein kinase domain containing protein - 4e-1 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) O.I. H.G. S.X.
0.12 5.9 0.91 Zm.9468.1.S1_at AY108678.1 hypothetical protein LOC100276825 - 2e-13 At1g73350 unknown protein O.I. H.G. S.X.
0.09 4.0 0.91 Zm.12705.1.S1_at CD440320 - - 7e-10 At5g20160 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein O.I. H.G. S.X.
0.04 1.5 0.91 Zm.19316.1.A1_at CO523375 - - 1e+0 At3g05860 MADS-box protein (AGL45) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	59.9	0.87	Zm.7685.3.A1_a_at	BM268156	-	-	4e+0	At4g27810	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.89	Zm.1169.1.A1_at	BM072743	RING finger protein 5	-	2e+0	At3g55460	SCL30	O.I.	H.G.	S.X.
0.40	48.5	0.86	Zm.18643.1.A1_at	CO521745	hypothetical protein LOC100272273	-	1e-7	At4g13730	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.
0.35	38.9	0.88	Zm.16447.1.S1_at	CF348931	-	-	1e+0	At5g16580	BGLU2 (BETA GLUCOSIDASE 2)	O.I.	H.G.	S.X.
0.31	31.6	0.89	Zm.14983.2.A1_at	AY109416.1	-	-	3e-5	At5g27150	NHX1 (NA+/H+ EXCHANGER)	O.I.	H.G.	S.X.
0.23	18.6	0.88	Zm.1756.1.S1_a_at	AF271237.1	casein kinase II alpha subunit	-	3e-123	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.
0.22	16.9	0.80	Zm.11653.1.A1_at	CF243979	hypothetical protein LOC100191865	-	6e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.
0.21	15.5	0.94	Zm.1064.1.S1_at	BE050611	-	-	7e+0	At3g57650	LPAT2	O.I.	H.G.	S.X.
0.20	14.2	0.81	Zm.1186.1.S1_at	CF060692	DNA-directed RNA polymerase II 19 kDa polypeptide	-	2e-16	At5g59180	NRPB7	O.I.	H.G.	S.X.
0.19	12.8	0.83	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5 98.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7 95.4 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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