Co-expression analysis

Gene ID	Zm.11653.1.A1_at
Gene name	hypothetical protein LOC100191865
Homology with Arabidopsis	Similar to At3g07460: unknown protein (HF=6e+0)
Module size	6 genes
NF	0.78
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.86	Zm.11653.1.A1_at	CF243979	hypothetical protein LOC100191865	-	6e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.86	Zm.16508.1.S1_x_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.87	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.86	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.89	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.87	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.5	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.88808.1.A1_at, orthologous to the query gene, Zm.11653.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.88808.1.A1_at	At3g07460	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.8880.1.S1_at	At3g07460	hypothetical protein	-	3e-31	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.7487.1.S1_at	At3g07460	hypothetical protein	-	6e-19	At2g41960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.2962.1.A1_a_at	At3g07460	hypothetical protein	-	8e-16	At5g19070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.5434.1.A1_at	At3g07460	hypothetical protein	-	6e-32	At4g29330	DER1 (DERLIN-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.2472.1.A1_s_at	At3g07460	hypothetical protein	-	1e-54	At1g54290	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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