CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.11653.1.A1_at

Gene name hypothetical protein LOC100191865
Homology with Arabidopsis Similar to At3g07460: unknown protein (HF=6e+0)

Module size 6 genes

NF 0.78

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.1 0.86 Zm.11653.1.A1_at CF243979 hypothetical protein LOC100191865 - 6e+0 At3g07460 unknown protein O.I. H.G. S.X.
0.83 95.6 0.86 Zm.16508.1.S1_x_at BE510313 ribosomal protein L39 - 4e-13 At4g31985 60S ribosomal protein L39 (RPL39C) O.I. H.G. S.X.
0.80 94.0 0.87 Zm.10261.1.A1_at BM501576 - - 4e-20 At5g62410 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) O.I. H.G. S.X.
0.77 92.1 0.86 Zm.9526.1.A1_at AY110244.1 long-chain-fatty-acid-CoA ligase-like protein - 2e-3 At3g16170 acyl-activating enzyme 13 (AAE13) O.I. H.G. S.X.
0.77 92.1 0.89 Zm.8357.1.A1_at BM267266 - - 1e-4 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) O.I. H.G. S.X.
0.67 85.8 0.87 Zm.16779.1.A1_at CF626512 hypothetical protein LOC100216924 - 2e-3 At5g48810 CB5-D (CYTOCHROME B5 ISOFORM D) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	69.1	0.86	Zm.11653.1.A1_at	CF243979	hypothetical protein LOC100191865	-	6e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.
0.83	95.6	0.86	Zm.16508.1.S1_x_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.
0.80	94.0	0.87	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	O.I.	H.G.	S.X.
0.77	92.1	0.86	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	O.I.	H.G.	S.X.
0.77	92.1	0.89	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.
0.67	85.8	0.87	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.5 99.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9 99.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3 99.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7 98.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6 98.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
18.5	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os12g0565375, orthologous to the query gene, Zm.11653.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os12g0565375 At3g07460 - - 1e+1 At4g13600 - O.I. H.G. S.X.
0.61 81.2 Os05g0378200 At3g07460 - - 3e+0 At2g41130 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.60 79.7 Os04g0379100 At3g07460 - - 7e-2 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.58 77.0 Os04g0256900 At3g07460 - - 4e+0 At1g69660 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.56 76.3 Os12g0508800 At3g07460 - - 6e-3 At5g61412 unknown protein O.I. H.G. S.X.
0.55 73.7 Os04g0678100 At3g07460 - Protein of unknown function DUF1218 family protein 2e-1 At1g52910 unknown protein O.I. H.G. S.X.
0.50 68.0 Os12g0254900 At3g07460 - - 3e+0 At5g25940 early nodulin-related O.I. H.G. S.X.
0.50 68.0 Os01g0334600 At3g07460 - - 3e-1 At5g66800 unknown protein O.I. H.G. S.X.
0.49 64.4 Os08g0186200 At3g07460 - - 7e-1 At2g41200 unknown protein O.I. H.G. S.X.
0.49 64.4 Os03g0825000 At3g07460 - - 2e+0 At4g32870 unknown protein O.I. H.G. S.X.
0.48 63.7 Os04g0213650 At3g07460 - - 3e+0 At4g33640 unknown protein O.I. H.G. S.X.
0.46 60.9 Os11g0688300 At3g07460 - - 9e-1 At5g11460 senescence-associated protein-related O.I. H.G. S.X.
0.45 58.8 Os12g0511600 At3g07460 - - 2e+0 At1g77510 ATPDIL1-2 (PDI-LIKE 1-2) O.I. H.G. S.X.
0.42 53.9 Os10g0123500 At3g07460 - - 3e+0 At5g14410 unknown protein O.I. H.G. S.X.
0.41 52.4 Os10g0359200 At3g07460 - - 6e-1 At4g02380 SAG21 (SENESCENCE-ASSOCIATED GENE 21) O.I. H.G. S.X.
0.41 52.4 Os05g0531300 At3g07460 - - 3e-1 At3g17160 unknown protein O.I. H.G. S.X.
0.37 45.0 Os11g0272400 At3g07460 - - 1e-1 At1g55475 unknown protein O.I. H.G. S.X.
0.37 45.0 Os06g0240300 At3g07460 - - 8e-1 At2g36050 OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) O.I. H.G. S.X.
0.36 44.0 Os11g0542450 At3g07460 - - 9e+0 At2g11015 unknown protein O.I. H.G. S.X.
0.35 41.7 Os10g0513700 At3g07460 - - 7e-1 At3g50540 unknown protein O.I. H.G. S.X.
0.34 40.0 Os03g0574501 At3g07460 - - 9e-1 At3g62830 AUD1 O.I. H.G. S.X.
0.34 40.0 Os01g0771600 At3g07460 - - 2e-2 At3g04370 PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4) O.I. H.G. S.X.
0.34 40.0 Os01g0207900 At3g07460 - Protein of unknown function DUF6 domain containingprotein 2e-3 At1g54410 dehydrin family protein O.I. H.G. S.X.
0.33 38.8 Os02g0183500 At3g07460 - Conserved hypothetical protein 8e-1 At5g55570 unknown protein O.I. H.G. S.X.
0.33 38.8 Os12g0230700 At3g07460 - - 4e+0 At5g14660 PDF1B (PEPTIDE DEFORMYLASE 1B) O.I. H.G. S.X.
0.33 38.8 Os12g0490700 At3g07460 - - 3e+0 At4g03060 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) O.I. H.G. S.X.
0.31 34.5 Os05g0493600 At3g07460 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 7e-1 At5g64800 CLE21 (CLAVATA3/ESR-RELATED 21) O.I. H.G. S.X.
0.31 34.5 Os03g0183900 At3g07460 - ATPase 10, plasma membrane-type (EC 3.6.3.6)(Proton pump 10) 2e-30 At1g17260 AHA10 (Autoinhibited H(+)-ATPase isoform 10) O.I. H.G. S.X.
0.31 34.5 Os07g0251400 At3g07460 - - 2e+0 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) O.I. H.G. S.X.
0.30 32.7 Os03g0437401 At3g07460 - - 6e-2 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) O.I. H.G. S.X.
0.29 31.1 Os08g0135700 At3g07460 - - 2e-1 At5g44450 methyltransferase O.I. H.G. S.X.
0.24 22.4 Os01g0612100 At3g07460 - Mitochondrial ribosomal protein S11 (Nuclearencoded) 1e-1 At1g52565 unknown protein O.I. H.G. S.X.
0.20 16.5 Os06g0305300 At3g07460 - - 3e+0 At5g02750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	Os12g0565375	At3g07460	-	-	1e+1	At4g13600	-	O.I.	H.G.	S.X.
0.61	81.2	Os05g0378200	At3g07460	-	-	3e+0	At2g41130	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.60	79.7	Os04g0379100	At3g07460	-	-	7e-2	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.58	77.0	Os04g0256900	At3g07460	-	-	4e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.
0.56	76.3	Os12g0508800	At3g07460	-	-	6e-3	At5g61412	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	Os04g0678100	At3g07460	-	Protein of unknown function DUF1218 family protein	2e-1	At1g52910	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	Os12g0254900	At3g07460	-	-	3e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.
0.50	68.0	Os01g0334600	At3g07460	-	-	3e-1	At5g66800	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	Os08g0186200	At3g07460	-	-	7e-1	At2g41200	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	Os03g0825000	At3g07460	-	-	2e+0	At4g32870	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	Os04g0213650	At3g07460	-	-	3e+0	At4g33640	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	Os11g0688300	At3g07460	-	-	9e-1	At5g11460	senescence-associated protein-related	O.I.	H.G.	S.X.
0.45	58.8	Os12g0511600	At3g07460	-	-	2e+0	At1g77510	ATPDIL1-2 (PDI-LIKE 1-2)	O.I.	H.G.	S.X.
0.42	53.9	Os10g0123500	At3g07460	-	-	3e+0	At5g14410	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	Os10g0359200	At3g07460	-	-	6e-1	At4g02380	SAG21 (SENESCENCE-ASSOCIATED GENE 21)	O.I.	H.G.	S.X.
0.41	52.4	Os05g0531300	At3g07460	-	-	3e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	Os11g0272400	At3g07460	-	-	1e-1	At1g55475	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	Os06g0240300	At3g07460	-	-	8e-1	At2g36050	OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)	O.I.	H.G.	S.X.
0.36	44.0	Os11g0542450	At3g07460	-	-	9e+0	At2g11015	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	Os10g0513700	At3g07460	-	-	7e-1	At3g50540	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	Os03g0574501	At3g07460	-	-	9e-1	At3g62830	AUD1	O.I.	H.G.	S.X.
0.34	40.0	Os01g0771600	At3g07460	-	-	2e-2	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	O.I.	H.G.	S.X.
0.34	40.0	Os01g0207900	At3g07460	-	Protein of unknown function DUF6 domain containingprotein	2e-3	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.
0.33	38.8	Os02g0183500	At3g07460	-	Conserved hypothetical protein	8e-1	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	Os12g0230700	At3g07460	-	-	4e+0	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.
0.33	38.8	Os12g0490700	At3g07460	-	-	3e+0	At4g03060	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)	O.I.	H.G.	S.X.
0.31	34.5	Os05g0493600	At3g07460	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	7e-1	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	O.I.	H.G.	S.X.
0.31	34.5	Os03g0183900	At3g07460	-	ATPase 10, plasma membrane-type (EC 3.6.3.6)(Proton pump 10)	2e-30	At1g17260	AHA10 (Autoinhibited H(+)-ATPase isoform 10)	O.I.	H.G.	S.X.
0.31	34.5	Os07g0251400	At3g07460	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	O.I.	H.G.	S.X.
0.30	32.7	Os03g0437401	At3g07460	-	-	6e-2	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	O.I.	H.G.	S.X.
0.29	31.1	Os08g0135700	At3g07460	-	-	2e-1	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.24	22.4	Os01g0612100	At3g07460	-	Mitochondrial ribosomal protein S11 (Nuclearencoded)	1e-1	At1g52565	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	Os06g0305300	At3g07460	-	-	3e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.11653.1.A1_at
Gene name	hypothetical protein LOC100191865
Homology with Arabidopsis	Similar to At3g07460: unknown protein (HF=6e+0)
Module size	6 genes
NF	0.78
%ile	96.8

Co-expression analysis

Gene ID Zm.11653.1.A1_at Gene name hypothetical protein LOC100191865 Homology with ArabidopsisSimilar to At3g07460: unknown protein (HF=6e+0) Module size 6 genes NF 0.78 %ile 96.8

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.11653.1.A1_at

Gene name hypothetical protein LOC100191865
Homology with Arabidopsis Similar to At3g07460: unknown protein (HF=6e+0)

Module size 6 genes

NF 0.78

%ile 96.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera