Co-expression analysis

Gene ID	Zm.11647.1.A1_at
Gene name	hypothetical protein LOC100193107
Homology with Arabidopsis	Similar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=3e-14)
Module size	18 genes
NF	0.78
%ile	96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.79	Zm.11647.1.A1_at	CO532634	hypothetical protein LOC100193107	-	3e-14	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.89	96.8	0.87	Zm.3740.1.A1_at	BG840857	22.0 kDa class IV heat shock protein	-	1e-1	At4g24240	WRKY7	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.89	Zm.12663.1.S1_at	BQ703906	hypothetical protein LOC100279518	-	3e-2	At5g46720	-	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.90	Zm.204.1.A1_at	U22432.1	ras related protein1	-	2e-90	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.88	Zm.4338.3.A1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.88	Zm.10199.1.A1_at	BM339092	hypothetical protein LOC100193850	-	2e-5	At1g06890	transporter-related	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.91	Zm.2917.1.A1_at	AW091235	Hypothetical protein LOC100192661	-	1e-22	At3g51850	CPK13	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.91	Zm.11931.1.S1_at	CD983258	px19-like protein	-	4e-1	At1g59590	ZCF37	O.I.	H.G.	S.X.	Please select
0.82	94.6	0.85	Zm.9909.1.A1_at	BM332451	-	-	4e+0	At5g15725	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.88	Zm.1123.1.S1_at	CF626368	hypothetical protein LOC100273168	-	1e-17	At1g24360	3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.89	Zm.13444.1.S1_at	CD441205	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit	-	2e-2	At1g76400	ribophorin I family protein	O.I.	H.G.	S.X.	Please select
0.79	92.8	0.86	Zm.15515.1.S1_at	CA404046	-	-	8e-1	At4g00830	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.89	Zm.14805.1.A1_at	BM380633	hypothetical protein LOC100280247	-	3e-6	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.89	Zm.14465.1.S1_at	AY108241.1	hypothetical protein LOC100279274	-	5e-15	At3g24550	ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.83	ZmAffx.810.1.A1_at	AI770396	-	-	2e-1	At3g01880	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.88	Zm.17363.1.S1_at	CK370960	-	-	2e-2	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.81	Zm.14077.2.A1_at	AY104520.1	-	-	5e+0	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.82	Zm.1146.1.S1_at	CF632184	D-3-phosphoglycerate dehydrogenase	-	7e+0	At3g19480	D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.4	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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