CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.11586.1.A1_at

Gene name
Homology with Arabidopsis Similar to Atmg00280: - (HF=6e+0)

Module size 6 genes

NF 0.61

%ile 82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 0.99 Zm.11586.1.A1_at BM379136 - - 6e+0 Atmg00280 - O.I. H.G. S.X.
0.67 85.8 0.99 Zm.13456.2.A1_at AY111230.1 Hypothetical protein LOC100194201 - 5e+0 At3g50520 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.67 85.8 0.99 ZmAffx.533.1.S1_at AI711769 - - 8e-1 At5g11790 Ndr family protein O.I. H.G. S.X.
0.60 77.8 0.99 Zm.17625.1.A1_at CF631845 - - 4e-23 At1g10200 WLIM1 O.I. H.G. S.X.
0.50 65.7 0.99 Zm.10593.1.A1_at BM380000 hypothetical protein LOC100194168 - 1e+0 At3g55350 unknown protein O.I. H.G. S.X.
0.47 59.9 0.99 Zm.3964.1.A1_a_at AF205603.1 ferric-chelate reductase (NADH)2 - 1e-17 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.5 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3 97.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1608142_at, orthologous to the query gene, Zm.11586.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 91.5 1608142_at Atmg00280 similar to tatD-related deoxyribonuclease family protein - 2e+0 At1g26690 emp24/gp25L/p24 family protein O.I. H.G. S.X.
0.58 79.8 1614075_at Atmg00280 hypothetical protein LOC100249048 - 2e+0 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) O.I. H.G. S.X.
0.50 72.7 1612751_at Atmg00280 hypothetical protein LOC100242745 - 5e-5 At1g67195 MIR414 (MICRORNA 414) O.I. H.G. S.X.
0.48 68.8 1607352_at Atmg00280 hypothetical protein LOC100263260 - 1e-28 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) O.I. H.G. S.X.
0.47 67.7 1607720_at Atmg00280 - - 2e+1 At5g43680 unknown protein O.I. H.G. S.X.
0.47 67.7 1619217_at Atmg00280 - - 8e-80 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.47 67.7 1613718_s_at Atmg00280 hypothetical protein LOC100241422 - 7e+0 At5g11120 unknown protein O.I. H.G. S.X.
0.43 61.5 1618987_at Atmg00280 hypothetical protein LOC100267493 - 2e-1 At2g43795 unknown protein O.I. H.G. S.X.
0.40 57.7 1614948_at Atmg00280 hypothetical protein LOC100265775 - 6e-61 At4g35360 pantothenate kinase family protein O.I. H.G. S.X.
0.39 54.9 1613021_at Atmg00280 hypothetical protein LOC100256504 - 1e-8 At4g10750 HpcH/HpaI aldolase family protein O.I. H.G. S.X.
0.39 54.9 1612456_at Atmg00280 hypothetical protein LOC100247868 - 5e-12 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.39 54.9 1616912_at Atmg00280 hypothetical protein LOC100246170 - 6e-6 At3g55600 - O.I. H.G. S.X.
0.39 54.9 1619141_at Atmg00280 - - 2e-1 At5g42655 - O.I. H.G. S.X.
0.37 51.7 1612915_at Atmg00280 hypothetical protein LOC100247677 - 8e-115 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.
0.34 46.8 1620757_at Atmg00280 hypothetical protein LOC100260825 - 4e-3 At1g51600 TIFY2A O.I. H.G. S.X.
0.33 45.7 1611366_at Atmg00280 hypothetical protein LOC100246260 - 1e+0 At5g08185 MIR162A (MICRORNA 162A) O.I. H.G. S.X.
0.32 43.1 1620509_at Atmg00280 hypothetical protein LOC100248585 - 2e-21 At4g39220 ATRER1A O.I. H.G. S.X.
0.29 37.7 1611281_at Atmg00280 hypothetical protein LOC100245241 - 2e+0 At5g50080 DNA binding / transcription factor O.I. H.G. S.X.
0.17 18.2 1619577_at Atmg00280 hypothetical protein LOC100266782 - 1e+0 At4g28950 ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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