Co-expression analysis

Gene ID	Zm.11586.1.A1_at
Gene name
Homology with Arabidopsis	Similar to Atmg00280: - (HF=6e+0)
Module size	6 genes
NF	0.61
%ile	82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.99	Zm.11586.1.A1_at	BM379136	-	-	6e+0	Atmg00280	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.26632.1.A1_at, orthologous to the query gene, Zm.11586.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	Ta.26632.1.A1_at	Atmg00280	-	-	3e-1	At4g09120	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.81841.1.S1_at	Atmg00280	-	-	1e+0	At5g51451	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.50768.1.S1_at	Atmg00280	-	-	1e-4	At1g53645	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.9551.1.S1_at	Atmg00280	-	-	1e+0	At2g36410	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.113092.1.S1_at	Atmg00280	-	-	1e+0	At5g02550	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.66028.1.S1_at	Atmg00280	-	-	8e+0	At3g54826	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.51916.1.S1_at	Atmg00280	-	-	3e+0	At4g26010	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.73323.1.S1_at	Atmg00280	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.110731.1.S1_at	Atmg00280	-	-	2e+1	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.85941.1.S1_at	Atmg00280	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.23355.1.S1_at	Atmg00280	-	-	1e+1	At4g33220	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.18019.2.S1_at	Atmg00280	-	-	1e+0	At1g32700	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.118620.1.S1_at	Atmg00280	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.22988.1.S1_at	Atmg00280	-	-	3e+0	At1g70830	MLP28 (MLP-LIKE PROTEIN 28)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.29653.1.S1_at	Atmg00280	-	-	1e+1	At5g65230	AtMYB53 (myb domain protein 53)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.78517.1.S1_at	Atmg00280	-	-	4e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.6658.1.S1_at	Atmg00280	-	-	3e+0	At1g26762	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.129082.2.S1_at	Atmg00280	-	-	4e-3	At1g58280	-	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.55653.1.S1_at	Atmg00280	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.27409.1.S1_at	Atmg00280	-	-	4e+0	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	RPTR-Ta-L36849-1_at	Atmg00280	-	-				O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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