Co-expression analysis

Gene ID	Zm.11586.1.A1_at
Gene name
Homology with Arabidopsis	Similar to Atmg00280: - (HF=6e+0)
Module size	6 genes
NF	0.61
%ile	82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.99	Zm.11586.1.A1_at	BM379136	-	-	6e+0	Atmg00280	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.601.1.A1_at, orthologous to the query gene, Zm.11586.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	95.1	Ptp.601.1.A1_at	Atmg00280	-	-	1e-10	At3g18780	ACT2 (ACTIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.5821.1.S1_at	Atmg00280	glutathione peroxidase	-	6e-28	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.209960.1.S1_s_at	Atmg00280	cytochrome P450 /// cytochrome P450	-	2e-4	At1g11610	CYP71A18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.216144.1.S1_at	Atmg00280	hypothetical protein	-	3e-6	At3g13050	transporter-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.2518.1.S1_x_at	Atmg00280	hypothetical protein	-	1e-58	At3g52930	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.10604.1.A1_s_at	Atmg00280	hypothetical protein	-	8e-72	At5g13420	transaldolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.4085.1.S1_a_at	Atmg00280	-	-	4e-49	At2g30740	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	Ptp.5782.1.S1_at	Atmg00280	hypothetical protein	-	2e-77	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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