CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.11586.1.A1_at

Gene name
Homology with Arabidopsis Similar to Atmg00280: - (HF=6e+0)

Module size 6 genes

NF 0.61

%ile 82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 0.99 Zm.11586.1.A1_at BM379136 - - 6e+0 Atmg00280 - O.I. H.G. S.X.
0.67 85.8 0.99 Zm.13456.2.A1_at AY111230.1 Hypothetical protein LOC100194201 - 5e+0 At3g50520 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.67 85.8 0.99 ZmAffx.533.1.S1_at AI711769 - - 8e-1 At5g11790 Ndr family protein O.I. H.G. S.X.
0.60 77.8 0.99 Zm.17625.1.A1_at CF631845 - - 4e-23 At1g10200 WLIM1 O.I. H.G. S.X.
0.50 65.7 0.99 Zm.10593.1.A1_at BM380000 hypothetical protein LOC100194168 - 1e+0 At3g55350 unknown protein O.I. H.G. S.X.
0.47 59.9 0.99 Zm.3964.1.A1_a_at AF205603.1 ferric-chelate reductase (NADH)2 - 1e-17 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	65.7	0.99	Zm.11586.1.A1_at	BM379136	-	-	6e+0	Atmg00280	-	O.I.	H.G.	S.X.
0.67	85.8	0.99	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.67	85.8	0.99	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	O.I.	H.G.	S.X.
0.60	77.8	0.99	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	O.I.	H.G.	S.X.
0.50	65.7	0.99	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	O.I.	H.G.	S.X.
0.47	59.9	0.99	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.5 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3 97.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
13.5	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, S0001000055C04F1_x_at, orthologous to the query gene, Zm.11586.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.99 100.0 S0001000055C04F1_x_at Atmg00280 - - 3e+0 At5g21950 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.38 49.5 Contig19333_at Atmg00280 - - 6e+0 At1g20350 ATTIM17-1 O.I. H.G. S.X.
0.35 45.1 AFFX-r2-Ec-bioD-3_at Atmg00280 - - O.I. H.G. S.X.
0.34 43.6 Contig24068_at Atmg00280 - - 2e-1 At4g33800 unknown protein O.I. H.G. S.X.
0.32 40.3 Contig15712_s_at Atmg00280 - - 7e-3 At1g22360 AtUGT85A2 (UDP-glucosyl transferase 85A2) O.I. H.G. S.X.
0.32 40.3 Contig17513_at Atmg00280 - - 4e-4 At5g06600 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) O.I. H.G. S.X.
0.32 40.3 AFFX-r2-P1-cre-3_at Atmg00280 - - O.I. H.G. S.X.
0.32 40.3 AFFX-BioDn-3_at Atmg00280 - - O.I. H.G. S.X.
0.31 38.6 AFFX-r2-P1-cre-5_at Atmg00280 - - O.I. H.G. S.X.
0.30 37.0 HZ49P22r_s_at Atmg00280 - - 9e-1 At5g42825 unknown protein O.I. H.G. S.X.
0.29 35.5 AFFX-BioB-5_at Atmg00280 - - O.I. H.G. S.X.
0.28 35.5 Contig3603_at Atmg00280 - - 2e-15 At3g25400 - O.I. H.G. S.X.
0.27 32.1 Contig4591_at Atmg00280 - - 4e-2 At4g22890 PGR5-LIKE A O.I. H.G. S.X.
0.26 30.4 Contig1068_at Atmg00280 - - 2e-4 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.
0.26 30.4 rbaal1d15_s_at Atmg00280 - - 3e+0 At5g43700 ATAUX2-11 (AUXIN INDUCIBLE 2-11) O.I. H.G. S.X.
0.24 27.2 HVSMEc0011F12r2_at Atmg00280 - - 5e+0 At4g19925 disease resistance protein (TIR class), putative O.I. H.G. S.X.
0.24 27.2 Contig17523_at Atmg00280 - - 7e-2 At4g08230 glycine-rich protein O.I. H.G. S.X.
0.24 27.2 Contig3810_at Atmg00280 - - 3e-18 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) O.I. H.G. S.X.
0.23 26.1 HVSMEl0020O13r2_s_at Atmg00280 - - 9e+0 At5g17150 - O.I. H.G. S.X.
0.23 26.1 Contig14601_at Atmg00280 - - 1e+0 At2g12905 unknown protein O.I. H.G. S.X.
0.23 26.1 HW09I11u_s_at Atmg00280 aquaporin - 2e+0 At2g33509 unknown protein O.I. H.G. S.X.
0.21 22.6 HD07I22r_s_at Atmg00280 - - 5e+0 At4g21090 adrenodoxin-like ferredoxin 1 O.I. H.G. S.X.
0.21 22.6 EBro03_SQ003_G18_at Atmg00280 - - 6e-2 At1g15930 40S ribosomal protein S12 (RPS12A) O.I. H.G. S.X.
0.19 19.6 EBro01_SQ001_I18_at Atmg00280 - - 3e+0 At2g40085 unknown protein O.I. H.G. S.X.
0.19 19.6 Contig5838_at Atmg00280 - - 1e-1 At5g34940 AtGUS3 (Arabidopsis thaliana glucuronidase 3) O.I. H.G. S.X.
0.18 18.2 Contig1157_at Atmg00280 - - 6e-15 At1g07790 HTB1 O.I. H.G. S.X.
0.18 18.2 HA28N15r_x_at Atmg00280 - - 3e-22 At5g59690 histone H4 O.I. H.G. S.X.
0.17 16.9 HB04L12r_at Atmg00280 - - 4e+0 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.
0.16 15.3 Contig758_at Atmg00280 - - 4e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.16 15.3 HVSMEn0001D07r2_at Atmg00280 - - 6e-1 At2g25260 unknown protein O.I. H.G. S.X.
0.15 14.1 Contig13277_at Atmg00280 - - 6e+0 At5g42680 unknown protein O.I. H.G. S.X.
0.14 12.9 HX03D06u_at Atmg00280 - - 5e-3 At2g37320 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.13 11.6 Contig4360_at Atmg00280 - - 2e-6 At5g61500 ATG3 O.I. H.G. S.X.
0.13 11.6 Contig23093_at Atmg00280 - - 5e-25 At1g09840 ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) O.I. H.G. S.X.
0.13 11.6 Contig21310_at Atmg00280 - - 1e-1 At5g24250 unknown protein O.I. H.G. S.X.
0.12 10.4 EBem05_SQ001_F02_at Atmg00280 - - 8e+0 At5g17240 SDG40 (SET DOMAIN GROUP 40) O.I. H.G. S.X.
0.12 10.4 HVSMEl0006A12r2_at Atmg00280 - - 2e+0 At5g57450 XRCC3 O.I. H.G. S.X.
0.11 9.4 HU08C09u_at Atmg00280 - - 8e-1 At3g30260 AGL79 (AGAMOUS-LIKE 79) O.I. H.G. S.X.
0.10 8.4 EBma03_SQ002_M07_at Atmg00280 - - 8e+0 At3g28680 prolylcarboxypeptidase-related O.I. H.G. S.X.
0.10 8.4 HV12N12u_at Atmg00280 - - 7e-2 At5g41200 AGL75 (AGAMOUS-LIKE 75) O.I. H.G. S.X.
0.09 7.4 HY01N07u_x_at Atmg00280 - - 6e+0 At1g71470 unknown protein O.I. H.G. S.X.
0.07 5.8 Contig4864_at Atmg00280 - - 2e-40 At4g17530 ATRAB1C O.I. H.G. S.X.
0.07 5.8 Contig2555_at Atmg00280 - - 5e-1 At1g47128 RD21 (responsive to dehydration 21) O.I. H.G. S.X.
0.07 5.8 Contig4072_at Atmg00280 - - 2e+0 At2g31610 40S ribosomal protein S3 (RPS3A) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.99	100.0	S0001000055C04F1_x_at	Atmg00280	-	-	3e+0	At5g21950	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.38	49.5	Contig19333_at	Atmg00280	-	-	6e+0	At1g20350	ATTIM17-1	O.I.	H.G.	S.X.
0.35	45.1	AFFX-r2-Ec-bioD-3_at	Atmg00280	-	-				O.I.	H.G.	S.X.
0.34	43.6	Contig24068_at	Atmg00280	-	-	2e-1	At4g33800	unknown protein	O.I.	H.G.	S.X.
0.32	40.3	Contig15712_s_at	Atmg00280	-	-	7e-3	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	O.I.	H.G.	S.X.
0.32	40.3	Contig17513_at	Atmg00280	-	-	4e-4	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	O.I.	H.G.	S.X.
0.32	40.3	AFFX-r2-P1-cre-3_at	Atmg00280	-	-				O.I.	H.G.	S.X.
0.32	40.3	AFFX-BioDn-3_at	Atmg00280	-	-				O.I.	H.G.	S.X.
0.31	38.6	AFFX-r2-P1-cre-5_at	Atmg00280	-	-				O.I.	H.G.	S.X.
0.30	37.0	HZ49P22r_s_at	Atmg00280	-	-	9e-1	At5g42825	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	AFFX-BioB-5_at	Atmg00280	-	-				O.I.	H.G.	S.X.
0.28	35.5	Contig3603_at	Atmg00280	-	-	2e-15	At3g25400	-	O.I.	H.G.	S.X.
0.27	32.1	Contig4591_at	Atmg00280	-	-	4e-2	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.
0.26	30.4	Contig1068_at	Atmg00280	-	-	2e-4	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.
0.26	30.4	rbaal1d15_s_at	Atmg00280	-	-	3e+0	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	O.I.	H.G.	S.X.
0.24	27.2	HVSMEc0011F12r2_at	Atmg00280	-	-	5e+0	At4g19925	disease resistance protein (TIR class), putative	O.I.	H.G.	S.X.
0.24	27.2	Contig17523_at	Atmg00280	-	-	7e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.
0.24	27.2	Contig3810_at	Atmg00280	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	O.I.	H.G.	S.X.
0.23	26.1	HVSMEl0020O13r2_s_at	Atmg00280	-	-	9e+0	At5g17150	-	O.I.	H.G.	S.X.
0.23	26.1	Contig14601_at	Atmg00280	-	-	1e+0	At2g12905	unknown protein	O.I.	H.G.	S.X.
0.23	26.1	HW09I11u_s_at	Atmg00280	aquaporin	-	2e+0	At2g33509	unknown protein	O.I.	H.G.	S.X.
0.21	22.6	HD07I22r_s_at	Atmg00280	-	-	5e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.
0.21	22.6	EBro03_SQ003_G18_at	Atmg00280	-	-	6e-2	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.
0.19	19.6	EBro01_SQ001_I18_at	Atmg00280	-	-	3e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.
0.19	19.6	Contig5838_at	Atmg00280	-	-	1e-1	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	O.I.	H.G.	S.X.
0.18	18.2	Contig1157_at	Atmg00280	-	-	6e-15	At1g07790	HTB1	O.I.	H.G.	S.X.
0.18	18.2	HA28N15r_x_at	Atmg00280	-	-	3e-22	At5g59690	histone H4	O.I.	H.G.	S.X.
0.17	16.9	HB04L12r_at	Atmg00280	-	-	4e+0	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.
0.16	15.3	Contig758_at	Atmg00280	-	-	4e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	O.I.	H.G.	S.X.
0.16	15.3	HVSMEn0001D07r2_at	Atmg00280	-	-	6e-1	At2g25260	unknown protein	O.I.	H.G.	S.X.
0.15	14.1	Contig13277_at	Atmg00280	-	-	6e+0	At5g42680	unknown protein	O.I.	H.G.	S.X.
0.14	12.9	HX03D06u_at	Atmg00280	-	-	5e-3	At2g37320	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.13	11.6	Contig4360_at	Atmg00280	-	-	2e-6	At5g61500	ATG3	O.I.	H.G.	S.X.
0.13	11.6	Contig23093_at	Atmg00280	-	-	5e-25	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.
0.13	11.6	Contig21310_at	Atmg00280	-	-	1e-1	At5g24250	unknown protein	O.I.	H.G.	S.X.
0.12	10.4	EBem05_SQ001_F02_at	Atmg00280	-	-	8e+0	At5g17240	SDG40 (SET DOMAIN GROUP 40)	O.I.	H.G.	S.X.
0.12	10.4	HVSMEl0006A12r2_at	Atmg00280	-	-	2e+0	At5g57450	XRCC3	O.I.	H.G.	S.X.
0.11	9.4	HU08C09u_at	Atmg00280	-	-	8e-1	At3g30260	AGL79 (AGAMOUS-LIKE 79)	O.I.	H.G.	S.X.
0.10	8.4	EBma03_SQ002_M07_at	Atmg00280	-	-	8e+0	At3g28680	prolylcarboxypeptidase-related	O.I.	H.G.	S.X.
0.10	8.4	HV12N12u_at	Atmg00280	-	-	7e-2	At5g41200	AGL75 (AGAMOUS-LIKE 75)	O.I.	H.G.	S.X.
0.09	7.4	HY01N07u_x_at	Atmg00280	-	-	6e+0	At1g71470	unknown protein	O.I.	H.G.	S.X.
0.07	5.8	Contig4864_at	Atmg00280	-	-	2e-40	At4g17530	ATRAB1C	O.I.	H.G.	S.X.
0.07	5.8	Contig2555_at	Atmg00280	-	-	5e-1	At1g47128	RD21 (responsive to dehydration 21)	O.I.	H.G.	S.X.
0.07	5.8	Contig4072_at	Atmg00280	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Zm.11586.1.A1_at
Gene name
Homology with Arabidopsis	Similar to Atmg00280: - (HF=6e+0)
Module size	6 genes
NF	0.61
%ile	82.2

Co-expression analysis

Gene ID Zm.11586.1.A1_at Gene name Homology with ArabidopsisSimilar to Atmg00280: - (HF=6e+0) Module size 6 genes NF 0.61 %ile 82.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.11586.1.A1_at

Gene name
Homology with Arabidopsis Similar to Atmg00280: - (HF=6e+0)

Module size 6 genes

NF 0.61

%ile 82.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera