Co-expression analysis

Gene ID	Zm.11586.1.A1_at
Gene name
Homology with Arabidopsis	Similar to Atmg00280: - (HF=6e+0)
Module size	6 genes
NF	0.61
%ile	82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.99	Zm.11586.1.A1_at	BM379136	-	-	6e+0	Atmg00280	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, Gma.17696.1.S1_at, orthologous to the query gene, Zm.11586.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	92.8	Gma.17696.1.S1_at	Atmg00280	-	-	3e+0	At3g18460	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.81655.1.S1_at	Atmg00280	-	-	3e-1	At2g03120	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.2488.1.S1_at	Atmg00280	-	-	2e-9	At4g30610	BRS1 (BRI1 SUPPRESSOR 1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.67694.1.S1_at	Atmg00280	-	-	1e+1	At5g32440	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.7335.1.S1_at	Atmg00280	-	-	7e-1	At4g33985	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.17438.1.S1_at	Atmg00280	-	-	3e+0	At2g11910	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.40377.1.A1_at	Atmg00280	-	-	1e+0	At5g53980	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.11872.1.S1_at	Atmg00280	-	-	4e-12	At4g15545	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.6790.1.S1_at	Atmg00280	-	-	7e-5	At4g15960	catalytic/ epoxide hydrolase	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.25812.1.S1_at	Atmg00280	-	-	9e-4	At3g50700	AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.14016.1.S1_at	Atmg00280	-	-	1e+0	At2g25890	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.16683.2.S1_at	Atmg00280	-	-	4e-13	At5g24490	30S ribosomal protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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