Co-expression analysis

Gene ID Zm.11469.2.A1_a_at
Gene name hypothetical protein LOC100279920
Homology with ArabidopsisSimilar to At3g20900: unknown protein (HF=4e+0)
Module size 6 genes
NF 0.24
%ile 19.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.93Zm.11469.2.A1_a_atCF630843hypothetical protein LOC100279920-4e+0At3g20900unknown proteinO.I.H.G.S.X.
0.4658.40.94Zm.15790.1.S1_atAY109814.1SWIb domain-containing protein-1e-1At4g26810SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4048.50.94Zm.2157.1.A1_a_atCA452419ribosomal protein S11-4e-39At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.3844.20.94Zm.12936.1.A1_atAY108987.1--7e-1At3g21338unknown proteinO.I.H.G.S.X.
0.3538.90.95Zm.678.1.S1_atAF302187.1sucrose export defective1-4e-15At4g32770VTE1 (VITAMIN E DEFICIENT 1)O.I.H.G.S.X.
0.083.40.93Zm.7727.2.S1_atCF972330--1e-1At4g13800permease-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.20710.1.S1_at, orthologous to the query gene, Zm.11469.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6986.9Ta.20710.1.S1_atAt3g20900--2e-1At4g33660unknown proteinO.I.H.G.S.X.
0.5273.7Ta.9517.1.S1_atAt3g20900--3e-10At2g33700protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.5072.4Ta.9579.2.S1_a_atAt3g20900--4e+0At5g57960GTP-binding family proteinO.I.H.G.S.X.
0.4058.4Ta.13251.1.A1_atAt3g20900--2e+0At3g61920unknown proteinO.I.H.G.S.X.
0.3854.7TaAffx.109965.1.S1_atAt3g20900Hypoxanthine-guanine phosphoribosyltransferase-like-9e-2At2g46662unknown proteinO.I.H.G.S.X.
0.3753.0Ta.10922.1.S1_atAt3g20900--9e-10At1g16710HAC12 (histone acetyltransferase of the CBP family 12)O.I.H.G.S.X.
0.3651.9Ta.9065.1.A1_atAt3g20900--7e+0At5g10810ATERO.I.H.G.S.X.
0.3549.8TaAffx.2546.1.S1_atAt3g20900--1e-2At5g22450unknown proteinO.I.H.G.S.X.
0.3448.1Ta.6803.1.A1_atAt3g20900--6e+0At4g24275-O.I.H.G.S.X.
0.2939.2Ta.6008.3.S1_atAt3g20900--4e+0At4g30550glutamine amidotransferase class-I domain-containing proteinO.I.H.G.S.X.
0.2939.2TaAffx.29359.1.S1_atAt3g20900--3e+0At5g48605-O.I.H.G.S.X.
0.2839.2Ta.21189.1.S1_atAt3g20900--9e+0At5g21970ubiquitin thiolesteraseO.I.H.G.S.X.
0.2839.2Ta.22207.1.S1_atAt3g20900--6e-7At1g47270AtTLP6 (TUBBY LIKE PROTEIN 6)O.I.H.G.S.X.
0.2735.6Ta.7252.1.A1_x_atAt3g20900--8e+0At4g11430hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2532.1Ta.469.1.S1_atAt3g20900--3e-19At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.2329.0Ta.5802.1.S1_atAt3g20900--7e-21At1g22620ATSAC1 (suppressor of actin 1)O.I.H.G.S.X.
0.2227.1Ta.16822.1.S1_atAt3g20900--3e-12At3g60800zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.2125.5Ta.23347.1.S1_atAt3g20900--1e-11At1g04140transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2024.0Ta.6557.1.A1_atAt3g20900--9e-3At3g15095unknown proteinO.I.H.G.S.X.
0.1415.8TaAffx.65658.1.S1_s_atAt3g20900--4e-1At4g36500unknown proteinO.I.H.G.S.X.
0.1314.6Ta.5602.2.S1_atAt3g20900--2e-1At1g25682cell cycle control protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage