Co-expression analysis

Gene ID Zm.11469.2.A1_a_at
Gene name hypothetical protein LOC100279920
Homology with ArabidopsisSimilar to At3g20900: unknown protein (HF=4e+0)
Module size 6 genes
NF 0.24
%ile 19.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.93Zm.11469.2.A1_a_atCF630843hypothetical protein LOC100279920-4e+0At3g20900unknown proteinO.I.H.G.S.X.
0.4658.40.94Zm.15790.1.S1_atAY109814.1SWIb domain-containing protein-1e-1At4g26810SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4048.50.94Zm.2157.1.A1_a_atCA452419ribosomal protein S11-4e-39At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.3844.20.94Zm.12936.1.A1_atAY108987.1--7e-1At3g21338unknown proteinO.I.H.G.S.X.
0.3538.90.95Zm.678.1.S1_atAF302187.1sucrose export defective1-4e-15At4g32770VTE1 (VITAMIN E DEFICIENT 1)O.I.H.G.S.X.
0.083.40.93Zm.7727.2.S1_atCF972330--1e-1At4g13800permease-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig10422_at, orthologous to the query gene, Zm.11469.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7086.0Contig10422_atAt3g20900--2e+0At3g01327-O.I.H.G.S.X.
0.7489.1Contig17513_atAt3g20900--4e-4At5g06600UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)O.I.H.G.S.X.
0.7086.0Contig17523_atAt3g20900--7e-2At4g08230glycine-rich proteinO.I.H.G.S.X.
0.6380.3Contig9703_atAt3g20900--3e+0At2g37200integral membrane protein, putativeO.I.H.G.S.X.
0.6077.3HVSMEl0020O13r2_s_atAt3g20900--9e+0At5g17150-O.I.H.G.S.X.
0.6077.3HZ49P22r_s_atAt3g20900--9e-1At5g42825unknown proteinO.I.H.G.S.X.
0.5674.3Contig4591_atAt3g20900--4e-2At4g22890PGR5-LIKE AO.I.H.G.S.X.
0.4053.1HM02P13u_s_atAt3g20900--6e+0At5g47980transferase family proteinO.I.H.G.S.X.
0.3138.6Contig22861_atAt3g20900--7e+0At3g59880unknown proteinO.I.H.G.S.X.
0.1919.6Contig23565_atAt3g20900--2e+0At4g14819unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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