Co-expression analysis

Gene ID Zm.11469.2.A1_a_at
Gene name hypothetical protein LOC100279920
Homology with ArabidopsisSimilar to At3g20900: unknown protein (HF=4e+0)
Module size 6 genes
NF 0.24
%ile 19.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.93Zm.11469.2.A1_a_atCF630843hypothetical protein LOC100279920-4e+0At3g20900unknown proteinO.I.H.G.S.X.
0.4658.40.94Zm.15790.1.S1_atAY109814.1SWIb domain-containing protein-1e-1At4g26810SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4048.50.94Zm.2157.1.A1_a_atCA452419ribosomal protein S11-4e-39At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.3844.20.94Zm.12936.1.A1_atAY108987.1--7e-1At3g21338unknown proteinO.I.H.G.S.X.
0.3538.90.95Zm.678.1.S1_atAF302187.1sucrose export defective1-4e-15At4g32770VTE1 (VITAMIN E DEFICIENT 1)O.I.H.G.S.X.
0.083.40.93Zm.7727.2.S1_atCF972330--1e-1At4g13800permease-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g20900, orthologous to the query gene, Zm.11469.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7989.1At3g20900821639unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.4963.5At4g31710829299ATGLR2.4member of Putative ligand-gated ion channel subunit familyO.I.H.G.S.X.
0.4761.2At4g28170828932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.2At3g17180820975scpl33 (serine carboxypeptidase-like 33)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.4457.2At5g01860831739zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;PO.I.H.G.S.X.
0.4355.3At1g56270842080unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.3At3g29796822693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.4253.9At3g02590820687delta 7-sterol-C5-desaturase, putativeF:oxidoreductase activity, C-5 sterol desaturase activity, iron ion binding;P:oxidation reduction, sterol biosynthetic process, fatty acid biosynthetic process;C:endoplasmic reticulum;OBFMPO.I.H.G.S.X.
0.4253.9At2g31050817657plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POAO.I.H.G.S.X.
0.4253.9At2g378303768017-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.9At1g64070842711RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1)Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.H.G.S.X.
0.4152.4At2g24255816960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.4At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.4At2g35990818172-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFMAO.I.H.G.S.X.
0.4152.4At4g03950825705glucose-6-phosphate/phosphate translocator, putativeF:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFBO.I.H.G.S.X.
0.4152.4At3g54060824573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.H.G.S.X.
0.4050.8At4g17130---O.I.H.G.S.X.
0.4050.8At1g28040839697protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.H.G.S.X.
0.4050.8At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBO.I.H.G.S.X.
0.4050.8At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)O.I.H.G.S.X.
0.4050.8At2g10930815557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.8At5g11370831008-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4050.8At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBO.I.H.G.S.X.
0.4050.8At3g52510824416-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3948.4At1g28220839716ATPUP3Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.3846.7At4g35590829711RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:endomembrane system;POMBFAO.I.H.G.S.X.
0.3846.7At1g34440840347unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.7At3g15910820834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.7At1g72130843544proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.H.G.S.X.
0.3846.7At4g14310827072-F:unknown;P:biological_process unknown;C:cell wall;OMBFPAVO.I.H.G.S.X.
0.3745.0At4g13570826990HTA4Encodes HTA4, a histone H2A protein.O.I.H.G.S.X.
0.3745.0At3g61170825289pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFBO.I.H.G.S.X.
0.3745.0At1g55580842007LAS (Lateral Suppressor)Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching.O.I.H.G.S.X.
0.3643.6At5g08090830703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO.I.H.G.S.X.
0.3643.6At3g27840822404RPL12-B (ribosomal protein l12-b)50S ribosomal protein L12-BO.I.H.G.S.X.
0.3541.6At3g22250821795UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOFO.I.H.G.S.X.
0.3541.6At3g20700821617F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.8At2g01960814727TET14 (TETRASPANIN14)Member of TETRASPANIN familyO.I.H.G.S.X.
0.3439.8At4g24860828589AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAVO.I.H.G.S.X.
0.3338.1At4g39440830099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.H.G.S.X.
0.3235.7At2g31420817700DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.3235.7At4g14590827107emb2739 (embryo defective 2739)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.3032.1At1g366203767020transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.3At5g24980832568unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2726.2At4g37230829877oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putativeF:calcium ion binding;P:photosystem II stabilization, photosynthesis;C:oxygen evolving complex, extrinsic to membrane;OPBMO.I.H.G.S.X.
0.2726.2At4g25540828659MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).O.I.H.G.S.X.
0.2624.4At5g48090834861ELP1 (EDM2-LIKE PROTEIN1)F:unknown;P:unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.2624.4At1g67760843101ATP binding / protein binding / unfolded protein bindingF:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFPO.I.H.G.S.X.
0.2420.7At3g18460821375unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.2420.7At1g14690838034MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.H.G.S.X.
0.2420.7At2g24310816967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVAO.I.H.G.S.X.
0.2319.3At1g63730842677disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response;C:intrinsic to membrane;PMBOAFO.I.H.G.S.X.
0.2115.8At4g21880828277-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBAO.I.H.G.S.X.
0.1811.4At5g40210834019nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAFMO.I.H.G.S.X.
0.1710.2At1g49930841416-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.2At4g39380830093-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.168.8At2g47820819394unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVO.I.H.G.S.X.
0.135.8At1g78480844184prenyltransferase/squalene oxidase repeat-containing proteinF:catalytic activity;P:unknown;C:endomembrane system;PFMOBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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