Co-expression analysis

Gene ID Zm.1140.1.S1_at
Gene name hypothetical protein LOC100279272
Homology with ArabidopsisSimilar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (HF=4e-14)
Module size 6 genes
NF 0.33
%ile 32.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.82Zm.1140.1.S1_atBM073428hypothetical protein LOC100279272-4e-14At3g49670BAM2 (BARELY ANY MERISTEM 2)O.I.H.G.S.X.
0.7389.90.81Zm.3132.1.A1_atBE512386hypothetical protein LOC100273996-1e-7At3g02510regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.6785.80.81Zm.18381.1.A1_s_atCO523274Hypothetical protein LOC100216796-4e-1At3g03720CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)O.I.H.G.S.X.
0.5571.60.83ZmAffx.1187.1.A1_atBE012211--3e+0At4g29033-O.I.H.G.S.X.
0.5571.60.86ZmAffx.160.1.A1_atAI668152--8e-1At4g24380unknown proteinO.I.H.G.S.X.
0.062.30.82Zm.782.1.A1_atCA404412hypothetical protein LOC100273031-4e-30At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.398.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616189_at, orthologous to the query gene, Zm.1140.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8695.11616189_atAt3g49670hypothetical protein LOC100260741-6e-18At1g75820CLV1 (CLAVATA 1)O.I.H.G.S.X.
0.4868.81612831_s_atAt3g49670H+-pyrophosphatase-5e-9At1g15690AVP1O.I.H.G.S.X.
0.3954.91622167_atAt3g49670hypothetical protein LOC100249144-9e-5At5g23410-O.I.H.G.S.X.
0.3954.91615292_atAt3g49670similar to oligopeptidase A-1e-37At5g10540peptidase M3 family protein / thimet oligopeptidase family proteinO.I.H.G.S.X.
0.3345.71616540_atAt3g49670hypothetical protein LOC100244175-3e-14At1g71865unknown proteinO.I.H.G.S.X.
0.3141.31622775_atAt3g49670hypothetical protein LOC100241371-3e-7At4g00570malate oxidoreductase, putativeO.I.H.G.S.X.
0.3039.41612742_s_atAt3g49670hypothetical protein LOC100260825-4e-3At1g51600TIFY2AO.I.H.G.S.X.
0.2937.71609313_atAt3g49670similar to 2-oxo acid dehydrogenase, lipoyl-binding site-6e-2At4g22320unknown proteinO.I.H.G.S.X.
0.2937.71618498_atAt3g49670hypothetical protein LOC100255416-7e-6At5g01980zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2937.71611783_atAt3g49670hypothetical protein LOC100262520-1e+0At2g43570chitinase, putativeO.I.H.G.S.X.
0.2734.01616447_atAt3g49670hypothetical protein LOC100242721-5e+0At5g25210unknown proteinO.I.H.G.S.X.
0.2428.71609604_atAt3g49670hypothetical protein LOC100264326-2e-3At1g34780ATAPRL4 (APR-like 4)O.I.H.G.S.X.
0.2327.51619413_atAt3g49670--7e-6At1g64850calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2225.61606924_a_atAt3g49670similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase-8e-86At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.2124.01621021_atAt3g49670hypothetical protein LOC100249161-2e-1At5g56610dual specificity protein phosphatase family proteinO.I.H.G.S.X.
0.2022.41621964_atAt3g49670hypothetical protein LOC100259817-2e-1At3g44950glycine-rich proteinO.I.H.G.S.X.
0.1819.41612995_atAt3g49670--4e-18At3g13340WD-40 repeat family proteinO.I.H.G.S.X.
0.1819.41619524_atAt3g49670--6e-2At5g13240transcription regulatorO.I.H.G.S.X.
0.1414.41621040_atAt3g49670hypothetical protein LOC100252271-1e-1At1g31750proline-rich family proteinO.I.H.G.S.X.
0.1414.41612817_atAt3g49670hypothetical protein LOC100267132-3e-1At3g62330zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.1313.31615154_atAt3g49670hypothetical protein LOC100251043-8e-6At3g09085unknown proteinO.I.H.G.S.X.
0.1313.31622461_atAt3g49670hypothetical protein LOC100265048-3e-28At5g53570RabGAP/TBC domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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