Co-expression analysis

Gene ID Zm.1140.1.S1_at
Gene name hypothetical protein LOC100279272
Homology with ArabidopsisSimilar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (HF=4e-14)
Module size 6 genes
NF 0.33
%ile 32.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.82Zm.1140.1.S1_atBM073428hypothetical protein LOC100279272-4e-14At3g49670BAM2 (BARELY ANY MERISTEM 2)O.I.H.G.S.X.
0.7389.90.81Zm.3132.1.A1_atBE512386hypothetical protein LOC100273996-1e-7At3g02510regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.6785.80.81Zm.18381.1.A1_s_atCO523274Hypothetical protein LOC100216796-4e-1At3g03720CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)O.I.H.G.S.X.
0.5571.60.83ZmAffx.1187.1.A1_atBE012211--3e+0At4g29033-O.I.H.G.S.X.
0.5571.60.86ZmAffx.160.1.A1_atAI668152--8e-1At4g24380unknown proteinO.I.H.G.S.X.
0.062.30.82Zm.782.1.A1_atCA404412hypothetical protein LOC100273031-4e-30At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.398.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.58629.1.S1_at, orthologous to the query gene, Zm.1140.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.5TaAffx.58629.1.S1_atAt3g49670--3e-1At2g13550unknown proteinO.I.H.G.S.X.
0.5678.6TaAffx.129082.2.S1_atAt3g49670--4e-3At1g58280-O.I.H.G.S.X.
0.4969.7TaAffx.119476.1.S1_atAt3g49670--1e+0At1g07240UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5)O.I.H.G.S.X.
0.4969.7TaAffx.112205.1.S1_atAt3g49670--4e+0At2g3616040S ribosomal protein S14 (RPS14A)O.I.H.G.S.X.
0.4869.0TaAffx.29653.1.S1_atAt3g49670--1e+1At5g65230AtMYB53 (myb domain protein 53)O.I.H.G.S.X.
0.4767.9Ta.10568.1.S1_atAt3g49670--2e+0At5g41685mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1)O.I.H.G.S.X.
0.4666.8TaAffx.64591.1.S1_atAt3g49670--1e+0At1g19010unknown proteinO.I.H.G.S.X.
0.4464.5TaAffx.112158.1.S1_x_atAt3g49670--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.4260.9TaAffx.111324.1.S1_atAt3g49670--7e-2At1g49380cytochrome c biogenesis protein familyO.I.H.G.S.X.
0.4260.9Ta.3203.2.S1_x_atAt3g49670--5e-6At1g27530-O.I.H.G.S.X.
0.4159.6TaAffx.112158.1.S1_atAt3g49670--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.3956.1TaAffx.59306.1.S1_atAt3g49670--1e+0At4g22570APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)O.I.H.G.S.X.
0.3854.7TaAffx.29732.1.S1_atAt3g49670--7e-1At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.3753.0TaAffx.93677.1.S1_atAt3g49670--3e+0At5g19473-O.I.H.G.S.X.
0.3753.0Ta.9084.3.S1_atAt3g49670--1e+1At5g50050invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3753.0TaAffx.3664.1.S1_atAt3g49670--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.3651.9TaAffx.56155.1.S1_atAt3g49670--1e+1At5g26070hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3651.9TaAffx.58638.1.S1_atAt3g49670--4e+0At1g12805nucleotide bindingO.I.H.G.S.X.
0.3549.8Ta.10689.2.S1_x_atAt3g49670--4e+0At1g21323unknown proteinO.I.H.G.S.X.
0.3549.8TaAffx.31313.1.S1_atAt3g49670--1e+1At3g52561unknown proteinO.I.H.G.S.X.
0.3448.1TaAffx.78579.1.S1_atAt3g49670--1e-1At1g76670transporter-relatedO.I.H.G.S.X.
0.3346.9TaAffx.36750.1.S1_atAt3g49670--4e+0At2g32050cell cycle control protein-relatedO.I.H.G.S.X.
0.3244.4TaAffx.30673.1.S1_atAt3g49670--7e-11At4g25630FIB2 (FIBRILLARIN 2)O.I.H.G.S.X.
0.3040.9TaAffx.24856.1.S1_atAt3g49670--4e+0At5g04440unknown proteinO.I.H.G.S.X.
0.3040.9TaAffx.57555.1.S1_atAt3g49670--2e+1At5g67600unknown proteinO.I.H.G.S.X.
0.3040.9TaAffx.78861.1.S1_atAt3g49670--1e+1At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.
0.3040.9TaAffx.50210.1.S1_atAt3g49670--7e-2At1g60880AGL56O.I.H.G.S.X.
0.2939.2Ta.12789.2.A1_x_atAt3g49670--5e-9At1g77710-O.I.H.G.S.X.
0.2939.2TaAffx.115939.2.S1_atAt3g49670--7e-2At1g30800-O.I.H.G.S.X.
0.2329.0Ta.3911.2.S1_s_atAt3g49670--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.1922.4TaAffx.51092.1.S1_atAt3g49670--1e+0At4g30097unknown proteinO.I.H.G.S.X.
0.1618.2Ta.8457.1.A1_x_atAt3g49670--6e+0At2g20619-O.I.H.G.S.X.
0.1517.1Ta.12360.1.A1_atAt3g49670--4e+0At1g70220unknown proteinO.I.H.G.S.X.
0.1314.6Ta.28609.1.S1_x_atAt3g49670--8e-15At2g1975040S ribosomal protein S30 (RPS30A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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