Co-expression analysis

Gene ID Zm.1140.1.S1_at
Gene name hypothetical protein LOC100279272
Homology with ArabidopsisSimilar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (HF=4e-14)
Module size 6 genes
NF 0.33
%ile 32.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.82Zm.1140.1.S1_atBM073428hypothetical protein LOC100279272-4e-14At3g49670BAM2 (BARELY ANY MERISTEM 2)O.I.H.G.S.X.
0.7389.90.81Zm.3132.1.A1_atBE512386hypothetical protein LOC100273996-1e-7At3g02510regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.6785.80.81Zm.18381.1.A1_s_atCO523274Hypothetical protein LOC100216796-4e-1At3g03720CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)O.I.H.G.S.X.
0.5571.60.83ZmAffx.1187.1.A1_atBE012211--3e+0At4g29033-O.I.H.G.S.X.
0.5571.60.86ZmAffx.160.1.A1_atAI668152--8e-1At4g24380unknown proteinO.I.H.G.S.X.
0.062.30.82Zm.782.1.A1_atCA404412hypothetical protein LOC100273031-4e-30At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.398.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0228800, orthologous to the query gene, Zm.1140.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9299.1Os03g0228800At3g49670-Protein kinase domain containing protein3e-17At3g49670BAM2 (BARELY ANY MERISTEM 2)O.I.H.G.S.X.
0.6281.5Os03g0209500At3g49670-Zn-finger, DHHC type domain containing protein4e-13At1g69420zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.6181.2Os12g0273700At3g49670--3e+0At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.5471.9Os07g0507200At3g49670-Cloacin family protein4e-4At1g03780targeting protein-relatedO.I.H.G.S.X.
0.5471.9Os09g0481100At3g49670-Phosphatidylinositol transfer-like protein IV5e-6At2g18180SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeO.I.H.G.S.X.
0.5371.3Os04g0486500At3g49670-Mitotic spindle checkpoint protein MAD21e-7At3g25980mitotic spindle checkpoint protein, putative (MAD2)O.I.H.G.S.X.
0.5269.6Os12g0120000At3g49670-Plant protein of unknown function DUF936 familyprotein1e+0At2g44560AtGH9B11 (Arabidopsis thaliana glycosyl hydrolase 9B11)O.I.H.G.S.X.
0.5168.7Os09g0560000At3g49670-Arabidopsis thaliana protein of unknown functionDUF813 family protein3e-2At2g07170bindingO.I.H.G.S.X.
0.5068.0Os12g0612700At3g49670-HD-Zip protein (Homeodomain transcription factor)(ATHB-14) (Homeodomain-leucine zipper protein 14)9e-33At2g34710PHB (PHABULOSA)O.I.H.G.S.X.
0.5068.0Os03g0587200At3g49670-Kinesin, motor region domain containing protein8e-6At3g20150kinesin motor family proteinO.I.H.G.S.X.
0.4964.4Os05g0476200At3g49670-Replication origin activator 26e-86At5g46280DNA replication licensing factor, putativeO.I.H.G.S.X.
0.4964.4Os03g0339700At3g49670-Plant protein of unknown function DUF827 familyprotein1e-6At3g56270unknown proteinO.I.H.G.S.X.
0.4762.3Os11g0580000At3g49670-ARM repeat fold domain containing protein3e-1At1g54580ACP2 (ACYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.4660.9Os03g0288900At3g49670-Hypothetical protein3e-1At1g05300ZIP5O.I.H.G.S.X.
0.4558.8Os04g0563700At3g49670-Cyclin4e-6At1g76310CYCB2O.I.H.G.S.X.
0.4458.1Os07g0145400At3g49670-Protein kinase domain containing protein4e-14At4g20940leucine-rich repeat family proteinO.I.H.G.S.X.
0.4051.1Os02g0809900At3g49670-Quinonprotein alcohol dehydrogenase-like domaincontaining protein3e-5At4g14310-O.I.H.G.S.X.
0.3644.0Os08g0558400At3g49670-Kinesin heavy chain (Fragment)1e-35At2g36200kinesin motor protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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