Co-expression analysis

Gene ID Zm.1140.1.S1_at
Gene name hypothetical protein LOC100279272
Homology with ArabidopsisSimilar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (HF=4e-14)
Module size 6 genes
NF 0.33
%ile 32.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.82Zm.1140.1.S1_atBM073428hypothetical protein LOC100279272-4e-14At3g49670BAM2 (BARELY ANY MERISTEM 2)O.I.H.G.S.X.
0.7389.90.81Zm.3132.1.A1_atBE512386hypothetical protein LOC100273996-1e-7At3g02510regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.6785.80.81Zm.18381.1.A1_s_atCO523274Hypothetical protein LOC100216796-4e-1At3g03720CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)O.I.H.G.S.X.
0.5571.60.83ZmAffx.1187.1.A1_atBE012211--3e+0At4g29033-O.I.H.G.S.X.
0.5571.60.86ZmAffx.160.1.A1_atAI668152--8e-1At4g24380unknown proteinO.I.H.G.S.X.
0.062.30.82Zm.782.1.A1_atCA404412hypothetical protein LOC100273031-4e-30At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.398.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g49670, orthologous to the query gene, Zm.1140.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3338.1At3g49670824129BAM2 (BARELY ANY MERISTEM 2)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.O.I.H.G.S.X.
0.8089.8At3g26920822308-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.7788.0At5g45590834597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.7586.9At1g24340839050emb2421 (embryo defective 2421)F:oxidoreductase activity, monooxygenase activity;P:embryonic development ending in seed dormancy;C:unknown;BOFPMO.I.H.G.S.X.
0.7385.5At1g50510841473indigoidine synthase A family proteinF:unknown;P:biological_process unknown;C:plasma membrane;OBFMPO.I.H.G.S.X.
0.4457.2At2g32910817853-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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