Co-expression analysis

Gene ID Zm.11379.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g29995: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.20
%ile 14.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.95Zm.11379.1.A1_atCB351163--5e+0At2g29995unknown proteinO.I.H.G.S.X.
0.6077.80.95Zm.7949.1.A1_atBQ538368hypothetical protein LOC100192737-2e+0At2g28480RNA bindingO.I.H.G.S.X.
0.3336.00.96Zm.10125.1.A1_a_atCF628795cytidine/deoxycytidylate deaminase family protein-5e-1At5g29807unknown proteinO.I.H.G.S.X.
0.147.70.95Zm.19034.1.S1_atBQ833817--1e+1At4g32900aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.147.70.96Zm.5502.1.A1_atBM378399hypothetical protein LOC100274214-1e-2At1g14330kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.062.30.96Zm.3374.1.S1_atBM380917--3e+0At1g21864-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.00.95Zm.15106.1.A1_atAI065782--7e-1At2g29360tropinone reductase, putative / tropine dehydrogenase, putativeO.I.H.G.S.X.
0.5775.10.94Zm.2814.1.A1_atCB833930zinc finger C-x8-C-x5-C-x3-H type family protein-3e+0At5g08100L-asparaginase / L-asparagine amidohydrolaseO.I.H.G.S.X.
0.5571.60.94Zm.9889.1.S1_atCF006010hypothetical protein LOC100272580-4e-1At1g21065unknown proteinO.I.H.G.S.X.
0.5065.70.92Zm.5375.1.A1_atAY107376.1beta-glucosidase-2e-6At3g18080BGLU44 (B-S GLUCOSIDASE 44)O.I.H.G.S.X.
0.5065.70.96Zm.3630.2.S1_atCO53143136.4 kDa proline-rich protein-3e+1At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)O.I.H.G.S.X.
0.2419.80.96Zm.17671.1.S1_atCK369711--3e+0At2g39510nodulin MtN21 family proteinO.I.H.G.S.X.
0.1710.60.96Zm.18498.1.A1_atCO530177GATA zinc finger family protein-2e-4At5g66320zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.169.40.93Zm.16338.1.A1_atCF348862--6e-2At1g04290thioesterase family proteinO.I.H.G.S.X.
0.125.90.93Zm.17365.1.S1_atCK371220--5e+0At3g25011unknown proteinO.I.H.G.S.X.
0.115.30.96Zm.1972.1.A1_atCF674994--2e+1Atcg00790-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.198.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320443protocol: mRNA - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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