Co-expression analysis

Gene ID Zm.11379.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g29995: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.20
%ile 14.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.95Zm.11379.1.A1_atCB351163--5e+0At2g29995unknown proteinO.I.H.G.S.X.
0.6077.80.95Zm.7949.1.A1_atBQ538368hypothetical protein LOC100192737-2e+0At2g28480RNA bindingO.I.H.G.S.X.
0.3336.00.96Zm.10125.1.A1_a_atCF628795cytidine/deoxycytidylate deaminase family protein-5e-1At5g29807unknown proteinO.I.H.G.S.X.
0.147.70.95Zm.19034.1.S1_atBQ833817--1e+1At4g32900aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.147.70.96Zm.5502.1.A1_atBM378399hypothetical protein LOC100274214-1e-2At1g14330kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.062.30.96Zm.3374.1.S1_atBM380917--3e+0At1g21864-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.198.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320443protocol: mRNA - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616506_at, orthologous to the query gene, Zm.11379.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.31616506_atAt2g29995hypothetical protein LOC100256211-7e-18At5g18850unknown proteinO.I.H.G.S.X.
0.7992.71610189_atAt2g29995hypothetical protein LOC100257691-4e+0At5g47830unknown proteinO.I.H.G.S.X.
0.6585.01619715_atAt2g29995hypothetical protein LOC100243011-5e-39At1g30470SIT4 phosphatase-associated family proteinO.I.H.G.S.X.
0.5779.81615804_atAt2g29995--4e-2At5g65910BSD domain-containing proteinO.I.H.G.S.X.
0.5375.21622731_atAt2g29995hypothetical protein LOC100257054-8e-12At3g55070-O.I.H.G.S.X.
0.5273.91619013_atAt2g29995hypothetical protein LOC100242671-3e-32At1g03260-O.I.H.G.S.X.
0.4868.81611870_atAt2g29995hypothetical protein LOC100247177-8e-152At5g09740HAM2 (histone acetyltransferase of the MYST family 2)O.I.H.G.S.X.
0.4564.61612043_atAt2g29995hypothetical protein LOC100256975-5e-41At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4564.61613769_atAt2g29995hypothetical protein LOC100265267-4e-48At1g51690ATB ALPHAO.I.H.G.S.X.
0.3954.91613731_atAt2g29995hypothetical protein LOC100248748-2e-5At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.
0.3954.91618813_atAt2g29995hypothetical protein LOC100263840-2e+0At1g69828-O.I.H.G.S.X.
0.3548.51606735_atAt2g29995hypothetical protein LOC100249353-4e+0At3g15420unknown proteinO.I.H.G.S.X.
0.3446.81613905_atAt2g29995hypothetical protein LOC100254141-3e-13At5g08160ATPK3O.I.H.G.S.X.
0.3345.71613730_atAt2g29995hypothetical protein LOC100264670-2e-43At2g26460RED family proteinO.I.H.G.S.X.
0.3039.41607444_atAt2g29995hypothetical protein LOC100247182-1e+0At4g20095unknown proteinO.I.H.G.S.X.
0.2837.71618348_atAt2g29995hypothetical protein LOC100265921-1e-47At5g45750AtRABA1c (Arabidopsis Rab GTPase homolog A1c)O.I.H.G.S.X.
0.2734.01613582_atAt2g29995hypothetical protein LOC100261825-6e-12At5g14170CHC1O.I.H.G.S.X.
0.2327.51622518_atAt2g29995hypothetical protein LOC100255499-1e+0At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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