Co-expression analysis

Gene ID	Zm.11379.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g29995: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.20
%ile	14.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.95	Zm.11379.1.A1_at	CB351163	-	-	5e+0	At2g29995	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.7949.1.A1_at	BQ538368	hypothetical protein LOC100192737	-	2e+0	At2g28480	RNA binding	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.19034.1.S1_at	BQ833817	-	-	1e+1	At4g32900	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.96	Zm.5502.1.A1_at	BM378399	hypothetical protein LOC100274214	-	1e-2	At1g14330	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.96	Zm.3374.1.S1_at	BM380917	-	-	3e+0	At1g21864	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8753.1.A1_at, orthologous to the query gene, Zm.11379.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.8753.1.A1_at	At2g29995	-	-	3e+0	At5g03050	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	TaAffx.130091.1.S1_at	At2g29995	-	-	2e+1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.11025.1.A1_at	At2g29995	-	-	4e-1	At4g20860	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.10191.1.S1_at	At2g29995	-	-	1e+0	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.128497.1.S1_at	At2g29995	-	-	3e-10	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.15430.1.A1_at	At2g29995	-	-	3e+0	At4g12090	cornichon family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage