Co-expression analysis

Gene ID	Zm.1133.1.S1_at
Gene name	hypothetical protein LOC100191400
Homology with Arabidopsis	Similar to At5g07030: aspartic-type endopeptidase (HF=6e-8)
Module size	6 genes
NF	0.14
%ile	9.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.89	Zm.1133.1.S1_at	BM382336	hypothetical protein LOC100191400	-	6e-8	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.92	Zm.4307.1.A1_at	BM333161	-	-	1e+0	At4g03170	DNA binding	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.89	Zm.2197.3.A1_a_at	CF650537	cystathionine gamma-synthase1 /// hypothetical protein LOC100191523	-	1e-5	At3g01120	MTO1 (METHIONINE OVERACCUMULATION 1)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.88	Zm.7590.1.A1_at	AY108881.1	hypothetical protein LOC100193636	-	2e+0	At2g03850	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.88	Zm.2472.2.A1_a_at	BM416740	cystathionine gamma-synthase	-	5e+0	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.89	Zm.12003.1.S1_at	CF630358	hypothetical protein LOC100273558	-	6e-3	At5g54250	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.3	91.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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