Co-expression analysis

Gene ID	Zm.11259.1.A1_at
Gene name	m19 protein
Homology with Arabidopsis	Similar to At4g18960: AG (AGAMOUS) (HF=1e-2)
Module size	6 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.96	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.11269.1.A1_at	CK347607	EF hand family protein	-	6e+0	At2g22460	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6743.1.S1_at, orthologous to the query gene, Zm.11259.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	Ta.6743.1.S1_at	At4g18960	MADS-box transcription factor TaAGL11	-	4e-11	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.12251.1.S1_x_at	At4g18960	-	-	6e-20	At1g17280	UBC34 (ubiquitin-conjugating enzyme 34)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.3041.1.S1_at	At4g18960	-	-	2e-1	At5g26080	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.21959.1.S1_at	At4g18960	-	-	7e-23	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.2768.1.S1_at	At4g18960	serine/threonine protein kinase	-	1e-12	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.16078.1.A1_x_at	At4g18960	-	-	1e-1	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.6555.1.S1_at	At4g18960	-	-	1e-12	At5g63610	CDKE	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.16078.1.A1_at	At4g18960	-	-	1e-1	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.12251.3.S1_x_at	At4g18960	-	-	8e-1	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.700.1.S1_at	At4g18960	-	-	2e-1	At5g10190	transporter-related	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.10446.1.S1_at	At4g18960	-	-	6e-1	At1g62980	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.11584.2.S1_a_at	At4g18960	-	-	3e-1	At1g80700	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.3064.1.S1_x_at	At4g18960	-	-	2e-5	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.9195.3.S1_x_at	At4g18960	-	-	3e+0	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.14434.1.S1_at	At4g18960	-	-	6e-6	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.9068.1.S1_at	At4g18960	-	-	8e-8	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.3038.1.S1_x_at	At4g18960	-	-	2e+0	At4g18180	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.15834.2.S1_s_at	At4g18960	-	-	4e-3	At4g39910	ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.4603.1.S1_at	At4g18960	-	-	9e-10	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.9314.1.S1_at	At4g18960	-	-	7e-7	At4g19003	VPS25	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.14690.1.A1_at	At4g18960	-	-	5e+0	At5g55870	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.4526.2.S1_at	At4g18960	-	-	1e+0	Atmg00920	-	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.11141.3.S1_x_at	At4g18960	-	-	3e-54	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.11104.1.A1_at	At4g18960	-	-	2e-8	At4g17640	CKB2	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.4317.1.A1_a_at	At4g18960	-	-	2e+0	At2g01790	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.128.1.S1_at	At4g18960	Tap	-	5e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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